BAC Information

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BAC

Clone NameMSMg01-435M22
Chromosome2 (Build37)
Map Location 17,804,177 - 17,804,579
singlet/doubletsinglet
Overlap genenone
Upstream gene4930515L03Rik, LOC383665, Nebl, LOC100041319, LOC100041047
Downstream gene1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435M22.T7 (MSMg01no435_m22.b1)MSMg01-435M22.TJ (MSMg01no435_m22.g1)
ACCAG527026AG527027
length797791
length of high quality
(start - end)		396 (42 - 437)413 (70 - 482)
definitionCHROMAT_FILE: MSMg01no435_m22.b1 PHD_FILE: MSMg01no435_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:41 2005CHROMAT_FILE: MSMg01no435_m22.g1 PHD_FILE: MSMg01no435_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGAGTTTATGCCATGAAACGGCCAGCAGGAGTGGCATCACTCACGAGC
TCCATGTAGCCTCCGAGTTCAGACTGCGGACTGCTCCAGAAATTCCCACA
GCCATACCCAAGTACACTGAACACAGATGCAGCAAGATGACTGGAGCAAG
AAGGCGGTTCTCAGTGGCGGCTGAGAACCCTGCCATCGCTCTTTGCTAAG
GAGATCTTATCTGAAGTGAAGGCATGGGGGAAAGCAAATGGCTAGAAGTG
GTTCTGGCTTCAAATACTGGCAATTTGTGTGGGAGAATGGACCAGGACCT
TAAAAGGACAAAAAAAAAAAATCAGGGCGGTGGTGGTGCACATCTTTAAT
CCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGC
CTGGTCTACAAAGTGAGTTCCAGGACAGCCACGGGTATACAGAGAAAACC
CTGACTTTGGAAAAAAAAAAAATCATAATGGGGAATTTCCGCACGGTTCA
AAAAAAAACAGTTCCTTATAAAAACCAAATAATTTCTCCTAGTAAGAAAA
AACCATTAACTTTTTAACTGTAAAAACTTGGAACACCTTGGAGTTCCTCC
CTNTTCCTCTCTCCTTGCCCTTTCCACTCCCCCCGTCTAGGGGAGGAAAA
AACAAAAAAAAACTTCGTGGGGGAATTCTTTGTTTTCCCATACAAAACCT
ACCTCCCCCCTATTTAATTTATTTTCTTCTTTTACCCGTCTGTCTTC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTCTGTCCCTGCTGGATATCCCACCTCCTA
TCTCCTGCCTTACTTCATTGGCCATGAGCTTCGTCTTTTTTGTTGACAGG
TGATGCCTTTAAGAGATTCTCTCTACACTCTACATCTACTGCTCTTAGTG
CTAAAAGTCTGCCTTGATCTGTATAGTGCATAAACTGCAAGTTCTGTTGT
GAGGTCCTTCCCTACCCTCCTTGAGACAGGGTCTCCTGTAGCTCCTGTTG
GCCTTGAACTTGTTATAAGACCGAGGGTGACTTTGAATTGCTAATCCTCT
TGCATGTACCTTCTCTGTTCTGGTATTACAGAAGTGTGTTCTTGGGCCCA
ACTTATGTGGTGCTGGAAATCGAACCCAGAGCTTCATGCCTGCTAGACAA
GCACTCTGCTAAATCTCCAATTTCTCTTTTAAGTCTTAAGGGCTATTATA
CCCTTCTCTGGACATCACTTACCTCAGCCCTTTCCCACCAAAGAGTTTTT
ACCCCTTGAACTAATGGGGGGGGGCTTTGGCCCAATTTAATGGAGGANAA
CCTTTATTTCTTAAAAGGGGATCCCCCTTGAATCTACCGCCCCCTATCCC
ATATGGGGATTTTTTTTTTTGCAAATGGCTTTTTTTTCTTTATATGCATC
TCTCTCTTTTGACTCCGAACATATTTCCTTTTTGGTTTCTTTTACTACTT
CCCTGTTACACCTTCCGTCTTTTCCCTCTTTTTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_m22.b1 MSMg01no435_m22.b1 CHROMAT_FILE:
MSMg01no435_m22.b1 PHD_FILE: MSMg01no435_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:41 2005
         (396 letters)



>mm_chr2_17803973_17804768
          Length = 796

 Score =  702 bits (363), Expect = 0.0
 Identities = 388/403 (96%), Gaps = 11/403 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgagtttatgccatgaaacggccagcaggagtggcatcactcacgagctccat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgagtttatgccatgaaacggccagcaggagtggcatcactcacgagctccat 264

                                                                       
Query: 65  gtagcctccgagttcagactgcggactgctccagaaattcccacagccatacccaagtac 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 gtagcctccgagttcagactgcggactgccccagaaattcccacagccatacccaagtac 324

                                                                       
Query: 125 actgaacacagatgcagcaagatgactggagcaagaaggcggttctcagtggcggctgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actgaacacagatgcagcaagatgactggagcaagaaggcggttctcagtggcggctgag 384

                                                                       
Query: 185 aaccctgccatcgctctttgctaaggagatcttatctgaagtgaaggcatgggggaaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaccctgccatcgctctttgctaaggagatcttatctgaagtgaaggcatgggggaaagc 444

                                                                       
Query: 245 aaatggctagaagtggttctggcttcaaatactggcaatttgtgtgggagaatggaccag 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 aaatggctagaagtggttctggcttcaaatactggcagtttgtgtgggagaatggaccag 504

                                                                       
Query: 305 gaccttaaaaggacaaaaaaaaaaaa-----------tcagggcggtggtggtgcacatc 353
           ||||||||||||||||||||||||||           |||||||||||||||||||||||
Sbjct: 505 gaccttaaaaggacaaaaaaaaaaaaaaaaaaaaaaatcagggcggtggtggtgcacatc 564

                                                      
Query: 354 tttaatcccagcacttgggaggcagaggcaggtggatttctga 396
           ||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 565 tttaatcccagcacttgggaggcagaggcaggcagatttctga 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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