Query= MSMg01no436_d24.b1 MSMg01no436_d24.b1 CHROMAT_FILE:
MSMg01no436_d24.b1 PHD_FILE: MSMg01no436_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:16 2005
(472 letters)
>mm_chr2_75379217_75380088
Length = 872
Score = 816 bits (422), Expect = 0.0
Identities = 458/472 (97%), Gaps = 4/472 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaagtctctcactccctttcatgggaagacctgtactgttctgcttgtcatcc 64
||||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaagtctcccaatccctctcatgggaagacctgtactgttctgcttgtcatcc 264
Query: 65 aaacctcccatgtacaactgtccctccaggatttcaggggaataacaacccatgaatccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacctcccatgtacaactgtccctccaggatttcaggggaataacaacccatgaatccc 324
Query: 125 accctgaaaggttatacaagtctaacaccagagtccagaaggcaaacttgggtatcattt 184
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 accctgaaaggttctacaagtctaacaccagagtccagaaggcaaacttgggtatcgttt 384
Query: 185 ctcaggctctatctgct----tgtttgtttgtttgtttgtttgtttgagacagtatctct 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcaggctctatctgctcccttgtttgtttgtttgtttgtttgtttgagacagtatctct 444
Query: 241 cactggcctgaaactcataaagtagtctaggctggctggtcaggaagttccaggaatcca 300
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 cactggcctgaaattcataaagtagtctaggctggctggccaggaagttccaggaatcca 504
Query: 301 tctttctctttctttcctgcactgaaattataagcatgcccagccaggcctgcttttgtt 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 tctttctctttctttcctgcactgaaattacaagcatgcccagccaggcctgcttttgtt 564
Query: 361 tgtttgtttatgtaatttctggggatcaaacccaggtcctcttgctggcaaagcaagcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtttgtttatgtaatttctggggatcaaacccaggtcctcttgctggcaaagcaagcac 624
Query: 421 tttatcaatgaagctctctcccccaattcgtctcagtaaagtcttctgccct 472
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 625 tttatcaatgaagctctctcccccaatgcgtctcagtaaagtcttctgccct 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_d24.g1 MSMg01no436_d24.g1 CHROMAT_FILE:
MSMg01no436_d24.g1 PHD_FILE: MSMg01no436_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:16 2005
(483 letters)
>mm_chr2_75516409_75517295
Length = 887
Score = 714 bits (369), Expect = 0.0
Identities = 438/487 (89%), Gaps = 41/487 (8%)
Strand = Plus / Minus
Query: 1 ctcccaattcagccggcccagcacatccagacagacactagtggatccgccagctactcc 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 874 ctcccaattcagccggcccagcacatccagacagacaccagtggatccgccagctactcc 815
Query: 61 caggtacactcgtcctggtgggagctaaggaaaactctagtgagaaagcagactctctgg 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 caggtacactcgtcgtggtgggagctaaggaaaactctagtgagaaagcagactctctgg 755
Query: 121 atttgagttcttggtctgccatttactgtgtcttttgtgagaaggagaagttctcaaact 180
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 754 agttgagttcttggtctgccatttactgtgtcttttgtgaggaggagaagttctcaaact 695
Query: 181 tagcttcttgatgagtgagggcctgagttcctttgagaattcctttgataatcaggacac 240
| ||||| ||||||||||||||||
Sbjct: 694 tcgcttc-------------------------------------ttgataatcaggacac 672
Query: 241 agatcacagggaggactttgtgagttacagaaacatcctctgtggggatgaaacagcggc 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 671 agatcacagggaggactttgtgagttacagaaacatcctctgtggtgatgaaacagcagc 612
Query: 301 agaaatactgttgggagtaaaagaagtaggcattgctcattgtggtaggcagggccctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agaaatactgttgggagtaaaagaagtaggcattgctcattgtggtaggcagggccctga 552
Query: 361 ttgtatgggtaactgacttaactgtgttaagtatgattcccattttatattcccatgtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttgtatgggtaactgacttaactgtgttaagtatgattcccattttatattcccatgtct 492
Query: 421 aaacaactaaagcatttgcccagaacactcagaaa----tgaagggaggttattgcctag 476
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 491 aaacaactaaagcattcgcccagaacactcagaaagaaatgaagggaggttattgcctag 432
Query: 477 cacagag 483
|||||||
Sbjct: 431 cacagag 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 887
Length adjustment: 10
Effective length of query: 473
Effective length of database: 877
Effective search space: 414821
Effective search space used: 414821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
