NNGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACACTTTTTTCAGGTCTAAATCTAAAGAAACAATACATTT
AAGGGTCTTAAACTAATATTGCTATGCCCCTTATCACTGCCAGGCACTGA
AACAGATCAAGGATAGCTCTGCTTATCAGCTATAGTATCTGGGCTTTTAA
GTAAGTTACTAGATTTCAAACTACTTTTGGAATATGACTTGGGTTGCCCA
GGGTCAGTAAGGCAAATTTGTATCCAACGCACTCCAGAGCATCTAGAAAA
ACCTAGCTTATTTTCAACTCAACCATTAGGAAATACATCTGTCAGTAGCT
TGAGTTCCAAGGGAGGTGTCTGACACATAGGAGCAAAGCAATCTCAAACC
ATCTAGGGGTCCTACAGCTATCCCGGCAAGCCAGAGATGTGAGAAGAGAG
TGAGGTTGCATTCCTCCTTCCTGGAAAGGATCAAGACTGAGGAGAATTAT
AGAGGACAAAAACTGCTAACAAGTAAGTGAAGTTAACAGCGGCTCTCAAA
GTTCAGAGCAAATAAAAGTCCAACAGGCGTGGTGACCATGCGCCCACGGA
GGAGGAGGAGGAGGAGGAGGAGGACCCAAGAATTAGTGCTGTTTAGCTTT
GCCAAGATGCCAGAGAGGAGGCGCGTGTGGTCATGGAGACCGAGAAGATC
GCCCCGTCTCTTCCGGTGTGCGTGGCGCCTAGTCGCTCACGCGT

NAACCCATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCAGCCTTCTAGGGTAGTCTCATGGGAATGGGTT
GGTAGGATGGGGAGAACCTTCATCGATGTGGAGGGGGGGAAGGAGANGNN
NNNNNNNNNNNGTNTNNNNNNGGGGGGGGGGGGNNGGGGGGGGGGGGGGG
GGGGTCGGGTTNTGTGCTGTTTTCTTTTCCCCCCCCCTCCTCTTCCCTTT
TTTTTCCCTCCCCCCCGCCCCTCTCCCCTTCCCCCCCCCCTCCCCTCCCC
CGCCCCCCCCCCCCTTCTTCGCTGTTTCCCCCCCCCCCCCCCCCCTTTCC
CTCCTTCCCCCCCCTTTCCTCCCCCCCCCCCCCACGCCGCGCCCTCCCCC
CCTCTCCTCCCCCCTCCCCCCCCTCCTTCCCCCCCCCTTCCCCCTCCCCT
CTGTCCCCCCTCCCCCTCCCCCCTCCCTCCCCTCCCCTCCCCCCCTTCCT
TCCCCCCTCCCCCCTCCCCCCCTCTCTCCCTCCCCTCCTCCCCCCCTCTT
CTCCTCCTCTCCCTCTCCCCCTCCCCTCTCTTCTCCTCCCCCCCCCCTCC
TCTCCCCCCTTCTCCCCCTCTCTCCTCCCTTCCTCCCCTTCTCCCTTCTC
CTCCTCTCTCTCCCCCCCCTCCTCTCTCCCTCCTCCCTCCCCTCTCCTCT
CCACTCCTCCCCCTCCTCCTCCCCTCCCCTCTCTCTTCCCCTCTCCCCTC
TCCTTCTCCCTCGCGCTCCCTCTTCCCCCGTCCCCCTCCCTCCTCCTCCC
CTTCCCCCCCTCCTCTTCCTCCCCCCCCTCCTCTCTTTCTCCCCCCCCCC
CCCCCCCTCCCCC

Query= MSMg01no436_e07.b1 MSMg01no436_e07.b1 CHROMAT_FILE:
MSMg01no436_e07.b1 PHD_FILE: MSMg01no436_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:17 2005
         (577 letters)



>mm_chr2_114479591_114480569
          Length = 979

 Score = 1007 bits (521), Expect = 0.0
 Identities = 551/561 (98%), Gaps = 2/561 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacacttttttcaggtctaaatctaaagaaacaatacatttaagggtcttaaac 63
           ||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcacacttttttgaggtctaaatctcaagaaacaatacacttaagggtcttaaac 263

                                                                       
Query: 64  taatattgctatgccccttatcactgccaggcactgaaacagatcaaggatagctctgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taatattgctatgccccttatcactgccaggcactgaaacagatcaaggatagctctgct 323

                                                                       
Query: 124 tatcagctatagtatctgggcttttaagtaagttactagatttcaaactacttttggaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatcagctatagtatctgggcttttaagtaagttactagatttcaaactacttttggaat 383

                                                                       
Query: 184 atgacttgggttgcccagggtcagtaaggcaaatttgtatccaacgcactccagagcatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgacttgggttgcccagggtcagtaaggcaaatttgtatccaacgcactccagagcatc 443

                                                                       
Query: 244 tagaaaaacctagcttattttcaactcaaccattaggaaatacatctgtcagtagcttga 303
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 444 tagaaaaacctagcttattttcaactcaaccaggaggaaatacatctgtcagtagcttga 503

                                                                       
Query: 304 gttccaagggaggtgtctgaca-cataggagcaaagcaatctcaaaccatctagggg-tc 361
           ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 504 gttccaacggaggtgtctgacaacataggagcaaagcaatctcaaaccatctaggggatc 563

                                                                       
Query: 362 ctacagctatcccggcaagccagagatgtgagaagagagtgaggttgcattcctccttcc 421
           |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 564 ctacagctctcccggcaagccagagatgtgagaagagagtgaggttgcaatcctccttcc 623

                                                                       
Query: 422 tggaaaggatcaagactgaggagaattatagaggacaaaaactgctaacaagtaagtgaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggaaaggatcaagactgaggagaattatagaggacaaaaactgctaacaagtaagtgaa 683

                                                                       
Query: 482 gttaacagcggctctcaaagttcagagcaaataaaagtccaacaggcgtggtgaccatgc 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gttaacagcggctctcaaagttcagagcaaataaaagtccaacaggcgtggtgaccatgc 743

                                
Query: 542 gcccacggaggaggaggagga 562
           |||||||||||||||||||||
Sbjct: 744 gcccacggaggaggaggagga 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 979
Length adjustment: 10
Effective length of query: 567
Effective length of database: 969
Effective search space:   549423
Effective search space used:   549423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)