Query= MSMg01no436_f06.b1 MSMg01no436_f06.b1 CHROMAT_FILE:
MSMg01no436_f06.b1 PHD_FILE: MSMg01no436_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:22 2005
(536 letters)
>mm_chr2_134770560_134771497
Length = 938
Score = 920 bits (476), Expect = 0.0
Identities = 526/554 (94%), Gaps = 18/554 (3%)
Strand = Plus / Minus
Query: 1 tcagcaaaggaaacctccacaaggtcatgcccattcagcagggcttcctcactgagaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tcagcaaaggaaacctccacaaggtcatgcccattcagcagggcttcctcactgagaggg 754
Query: 61 caagctgtat------------------ctgagcagctaatactgctgctgccatgcaac 102
|||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 753 caagctgtatactaagcaatgctgtatactgagcagctaatactgctgctgccgtgcaac 694
Query: 103 ctaagcaatggagcttgggcaggaagtgagctctagcacgtagtgagagccgactggacc 162
||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct: 693 ctaagcaatggagcttgggcaggaagtgagctctagcacttagtgaaagcccactggacc 634
Query: 163 tcagcatcaggacagcatgtgtattctgtggcgaagagttgcagctctctgagcactcac 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tcagcatcaggacagcatgtgtattctgtggcgaagagttgcagctctctgagcactcac 574
Query: 223 aggcaacattccataaaaccacgtctctttttgagagaaggaaggatataggctctcgaa 282
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 573 aggcaacattccataaaaccacatctctttttgagagatggaaggatataggctctcgaa 514
Query: 283 ctagaccatcttattaaattaaatttcccctttattagttaaagccatgagtcttgattc 342
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctagaccatcttattaagttaaatttcccctttattagttaaagccatgagtcttgattc 454
Query: 343 atgttaataacctctccacacttcatctttccacctaaaatacaaaatcttcaccttttg 402
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 453 atgttaataacctctccacacttcatctttccacctaaaatataaaatcttcaccttttg 394
Query: 403 ttttctataataatcaattgagttaatgcactagtgtgtactgaaaataaggccttgagc 462
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 393 ttttctataataatcaattgagttaatgcactagtgtttactgaaaataaggccttgggc 334
Query: 463 atgagaagaaattaaagagataatattggtttatagtcactgattaccttcatttaaaga 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atgagaagaaattaaagagataatattggtttatagtcactgattaccttcatttaaaga 274
Query: 523 cagtatggtttctg 536
||||||||||||||
Sbjct: 273 cagtatggtttctg 260
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 938
Length adjustment: 10
Effective length of query: 526
Effective length of database: 928
Effective search space: 488128
Effective search space used: 488128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_f06.g1 MSMg01no436_f06.g1 CHROMAT_FILE:
MSMg01no436_f06.g1 PHD_FILE: MSMg01no436_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:22 2005
(512 letters)
>mm_chr2_134596611_134597522
Length = 912
Score = 936 bits (484), Expect = 0.0
Identities = 505/512 (98%)
Strand = Plus / Plus
Query: 1 ctttccttctatgccaataatttgtaaataccatcttttctaaatgtgtgggatgtatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttccttctatgccaataatttgtaaataccatcttttctaaatgtgtgggatgtatcc 260
Query: 61 cacaaatctcttatattctgttcatatattttaaaaagaaattgtcattgagtttcagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 cacaaatctcttatattctgttcatatattttaaaaagaaattgtcattgactttcagtg 320
Query: 121 aattacctagttcctctaccatactcttgatccctgctatccacatgacccattctattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattacctagttcctctaccatactcttgatccctgctatccacatgacccattctattt 380
Query: 181 gcaagactttccatggagtttcttatttggtgtgttaaaattttcatttctgatatcttt 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 gcaagactttccatggagtttcttatttggtgtgttaaaaatttcatttctgatatcttt 440
Query: 241 tgaattcaaaacttatttctatatgctaaattctattttcatatcttacactgagatctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaattcaaaacttatttctatatgctaaattctattttcatatcttacactgagatctt 500
Query: 301 tatttcactgagctttaaaaattaccctggaaattattcatatcctcttagaatttattc 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttcactgagctttaaaaattactctggaaattattcatatcctcttagaatttattc 560
Query: 361 ataaatttgtctatgcctactttgagatctttgagcatatttacactttttctttgcatt 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaatttgtctatgcctactctgagatctttgagcatatttacactttttctttgcatt 620
Query: 421 ctttgtctggaatttcacataagtcactgagcaagttgtgataagtgctcatatttttaa 480
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 ctttgtctggaatttcatataagtcactgagcaagttgtgataagtgctcatatttaaaa 680
Query: 481 aaatatgagaaatatcacataaaatcctaatt 512
||||||||||||||||||||||||||||||||
Sbjct: 681 aaatatgagaaatatcacataaaatcctaatt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
