NNNNNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTGTTTTTGCAGAGTGGCATGCCTAGGACAGGGGTTGA
CCCTTTACACTCTACAAACATTTTTCTGTCATCAGGGTACTTCCTCATCC
CTGACTACTCCCACAGATGTGTTTCTGCACCTCCACAGGCATGGTGGAGC
TGCAGCTGACTTCTGTTGTTCTGAGCAGCCAAGGGCCAAAGGAAGGTTTG
CTAAGCTCTCACTTGGTGCTTCCAGGTCTGGCAGTCTCTAGATCTGATCC
CCATCTGCCACACCAGGTGGCAAAGTATACCAGGTGGTAAAGTGAGCAAT
ATCCATTCCAGCACCTCCTTGTGGAAGAGAAATGTATACATTTCATTTAG
GGATAGTAACTACCTACTCTTGGGATAAGCACCATCTTTTTCATTTGCAC
TCATCTATCATTTATTCCTTCATTAAACTTTTATTCAGGTGCTAAAGTTT
TTCCAAGTATCGTAAGCATGGAATTTGGCTTTCTGTCATTTTTTATTTAT
TTTTTTTTTAACTCTAGAAAACACTAGATGTACATTTTGGCCACAGTTGC
CTTCAAGTGACTCAAACCGCCTCCTACACCTGTTTTTCTTAAAAAACCTC
CCCCCCCGGATGGTTTTTATCCTTTTGAAAGCGGATTTTAACTCCCCGCT
TGAATCCCCCCCAATTTGCCCAAATGTTCCCTACCTCCCAAAGGGCTGGG
TTTTACCCATGTGT

NNNCCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGTTTCTTCTTTGAAT
GATTCTTCTTTTTACCCAGGTTCTCCTATATTTTTTAATAGAGTGATTCA
TGTCTTCTGAATGTTCTCTGTAATCTTCATGAGATGGATTTTAGGTCAGA
GTCTTGCATTTCAGCTCTGCTAGAGTATGCAGGGCTTGCTGTGGTGGAAA
AACTGGGTTATGATGGTGCAAAGTGGTGTTGGTGTCTGTTGCTTATGTTC
TTGTTCTTGCCTCTTGGCATCTGGTTATCTCACGTGTTAACTGACAGTAC
TGCATCTGACTGTATACTGTCCATCCTGTGAGCCTGTGAGCCTAGTCGTG
AAGGAGCTCCTGGGAGTCATGCTGTCTCTGGTTGTGGCAGGGCATCAGAT
CACTGGCTCTGCCCGGGACCAAATGGAGAGTCTTTTATATTATCATGCTA
GCCTTTTTTTGGATATCCAAATTGGCTATTTTAATTTATTTATTTTAATT
AATTTTTAACGGTTTCTATTACTATTTTCCCCCAATTAAATTTCTTTGGC
TTTCCCCTATGTTTCTTTTTCTTCCCCCCTCTTTTTTTATATTTCTATTT
TCCATTCTTTATGAACGCGGTATTTCTCTCTACCGCCCCTAAATTTTTCT
TTTTCCGCCCCTGTTTTCTTCTTTTTCATATATCTTAATCTCCCTTTATT
TTTTTATTTTCCCN

Query= MSMg01no436_h06.b1 MSMg01no436_h06.b1 CHROMAT_FILE:
MSMg01no436_h06.b1 PHD_FILE: MSMg01no436_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:31 2005
         (436 letters)



>mm_chr2_56133288_56134123
          Length = 836

 Score =  745 bits (385), Expect = 0.0
 Identities = 421/433 (97%), Gaps = 2/433 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgtttttgcagagtggcatgcctaggacaggggttgaccctttacactctac 64
           |||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcattgtttttgtagagtggcatgactaggacaggggttaaccctttacactctac 264

                                                                       
Query: 65  aaacatttttctgtcatcagggtacttcctcatccctgactactcccacagatgtgtttc 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacattcttctgtcatcagggtacttcctcatccctgactactcccacagatgtgtttc 324

                                                                       
Query: 125 tgcacctccacaggcatggtggagctgcagctgacttctgttgttctgagcagccaaggg 184
           || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtacctccacaggcatgatggagctgcagctgacttctgttgttctgagcagccaaggg 384

                                                                       
Query: 185 ccaaaggaaggtttgctaagctctcacttggtgcttccag-gtctggcagtctctagatc 243
           ||||||| |||||||||||||||||||||| |||| |||| |||||||||||||||||||
Sbjct: 385 ccaaagg-aggtttgctaagctctcacttgatgctaccagtgtctggcagtctctagatc 443

                                                                       
Query: 244 tgatccccatctgccacaccaggtggcaaagtataccaggtggtaaagtgagcaatatcc 303
           ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgatccctatctgccacactaggtggcaaagtataccaggtggtaaagtgagcaatatcc 503

                                                                       
Query: 304 attccagcacctccttgtggaagagaaatgtatacatttcatttagggatagtaactacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attccagcacctccttgtggaagagaaatgtatacatttcatttagggatagtaactacc 563

                                                                       
Query: 364 tactcttgggataagcaccatctttttcatttgcactcatctatcatttattccttcatt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tactcttgggataagcaccatctttttcatttgcactcatctatcatttattccttcatt 623

                        
Query: 424 aaacttttattca 436
           |||||||||||||
Sbjct: 624 aaacttttattca 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)