Query= MSMg01no436_i10.b1 MSMg01no436_i10.b1 CHROMAT_FILE:
MSMg01no436_i10.b1 PHD_FILE: MSMg01no436_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:37 2005
(490 letters)
>mm_chr2_142931400_142932289
Length = 890
Score = 866 bits (448), Expect = 0.0
Identities = 478/490 (97%), Gaps = 5/490 (1%)
Strand = Plus / Plus
Query: 4 ggaattcagcatatt---acacactattggcttatttaaacattaacagaaagattacat 60
||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcagcata--gcgacccactattggcttatttaaacattaacagaaagattacat 260
Query: 61 gtacgtgcagggtgtcagagttctgtgagctgttgactcagttcagatagccctgctatg 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gtacgtgcagggtgtcagagttctgtgagttgttgactcagttcagatagccctgctatg 320
Query: 121 tcttcacagtcccctttatcttatggtcaagatgttcccaggaatgttttaactacgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcacagtcccctttatcttatggtcaagatgttcccaggaatgttttaactacgggg 380
Query: 181 catacccaggtttgtttttctcttttctcagccccaggcagcctctaggctcacaaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catacccaggtttgtttttctcttttctcagccccaggcagcctctaggctcacaaacaa 440
Query: 241 ccagcaatttctgagtactttatatgacttacttgttttgaaatttcatctttctttcac 300
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 441 ccagcaatttctgagtactttatatgacttacaggtcttgaaatttcatctttctttcac 500
Query: 301 cagcacctgcagtcacatgcatatgccatagccacccccacacctataatcaaataaaaa 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 cagcacctgcagtcacatgcatatgccataaccacccccacacctataatcaaataaaaa 560
Query: 361 gaaaatatagatgtttttaaatgctgcagacaaagttgcaagaagacggtcagaattcag 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 gaaaatatagatgtttttaaatgctgcagataaagttgcaagaagacggtcagaattcag 620
Query: 421 aaacaaaaagcagatactaactttgtatttctaaattgggctactcagaaatgtccatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacaaaaagcagatactaactttgtatttctaaattgggctactcagaaatgtccatca 680
Query: 481 cagacataca 490
||||||||||
Sbjct: 681 cagacataca 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_i10.g1 MSMg01no436_i10.g1 CHROMAT_FILE:
MSMg01no436_i10.g1 PHD_FILE: MSMg01no436_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:37 2005
(540 letters)
>mm_chr2_143093118_143094057
Length = 940
Score = 1036 bits (536), Expect = 0.0
Identities = 539/540 (99%)
Strand = Plus / Minus
Query: 1 acttggattttcataaagcctgcactgacccaaagggaatctatagcactgccaagcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acttggattttcataaagcctgcactgacccaaagggaatctatagcactgccaagcttc 557
Query: 61 aggtatgaaaattttccggtggtaacaatggaccagctcctagaagggacacctaatacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aggtatgaaaattttccggtggtaacaatggaccagctcctagaagggacacctaatacc 497
Query: 121 acccctcattaactgttggtgaagatcttacagttcctttcattgttattattcaagatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 acccctcattaactgttggtgaagatcttacagttcctttcattgttattattcaagatt 437
Query: 181 caccactatctataatatttttagaagatgaaaaaaactacccacattatcaacagttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 caccactatctataatatttttagaagatgaaaaaaactacccacattatcaacagttag 377
Query: 241 ccatctttatagcaatttctataatcttccctatttcacaaatgtttaatgtcccctcta 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccatctttagagcaatttctataatcttccctatttcacaaatgtttaatgtcccctcta 317
Query: 301 aatatgaacaatttctacatgtcttcaaattagtttctgatctcatttattcccatataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aatatgaacaatttctacatgtcttcaaattagtttctgatctcatttattcccatataa 257
Query: 361 actgtaaatagcttagatttttataatgggtcactactgtttttaaaattactcttggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 actgtaaatagcttagatttttataatgggtcactactgtttttaaaattactcttggtc 197
Query: 421 ctggggctggaacccgggatctgacacatgatagattactgctctaccacaaagctatac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ctggggctggaacccgggatctgacacatgatagattactgctctaccacaaagctatac 137
Query: 481 tcttagaaaatggtttactaattcacaaagcttccatccttggctgacttcagaattgtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tcttagaaaatggtttactaattcacaaagcttccatccttggctgacttcagaattgtc 77
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
