Query= MSMg01no436_j21.b1 MSMg01no436_j21.b1 CHROMAT_FILE:
MSMg01no436_j21.b1 PHD_FILE: MSMg01no436_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:44 2005
(567 letters)
>mm_chr2_35804226_35805192
Length = 967
Score = 1013 bits (524), Expect = 0.0
Identities = 557/568 (98%), Gaps = 1/568 (0%)
Strand = Plus / Plus
Query: 1 atccttattctaagaatctcctgcctcgatgttgtgtacattgctccccagttattccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atccttattctaagaatctcctgcctcgatgttgtgtacattgctccccagttattccct 259
Query: 61 cattcaataaagaagctgatcagccaatgactgagcaggggaaagaatagagctggactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cattcaataaagaagctgatcagccaatgactgagcaggggaaagaatagagctggactt 319
Query: 121 ccccccagccaggggaggggacaggagagagaggaagaggagattcagccacaaggaggg 180
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 320 tcccccagccaggggaggggacaggagagagaggaagaggagattcggccacaaggaggg 379
Query: 181 caagaggagacatcatgggaaaacacacttgaatcccagagag-cataccaatactaaaa 239
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 380 caagaggagacatcatgggaaaacacacttgaagcccagagagccataccaatactaaaa 439
Query: 240 tgcaactatctctgggatgttggctgggaggtacacagattagcttagaggaatagaata 299
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 cgcaactatcactgggatgttggctgggaggtacacaaattagcttagaggaatagaata 499
Query: 300 gatcaatgactgcccaggtgttgtgcagtaaagcttgattatacaaatctaatagtctct 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatcaatgactgcccaggtattgtgcagtaaagcttgattatacaaatctaatagtctct 559
Query: 360 gtcttattgacttgggaactagccaggaatagaggaatactgccacttttaaaactagtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtcttattgacttgggaactagccaggaatagaggaatactgccacttttaaaactagtt 619
Query: 420 ttacatagaagtgggaaatacgctttgatatgggcaagcacatttgcagtacatagacag 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttacacagaagtgggaaatacgctttgatatgggcaagcacatttgcagtacatagacag 679
Query: 480 gagaaaccatccaaaccagtgctttgagcagatggcccaggggctggagagattgctcaa 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 680 gagaaaccatccaaaccagtgctttgaacagatggcccaggggctggagagattgctcaa 739
Query: 540 tgattacaggcatgtgctccttttgtag 567
|| |||||||||||||||||||||||||
Sbjct: 740 tggttacaggcatgtgctccttttgtag 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_j21.g1 MSMg01no436_j21.g1 CHROMAT_FILE:
MSMg01no436_j21.g1 PHD_FILE: MSMg01no436_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:44 2005
(531 letters)
>mm_chr2_35981556_35982486
Length = 931
Score = 957 bits (495), Expect = 0.0
Identities = 511/519 (98%), Gaps = 5/519 (0%)
Strand = Plus / Minus
Query: 1 tcagagtgcctgcctctgcctcctcagtgctgggattaaaaccatgctccatcatgcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tcagagtgcctgcctctgcctcctcagtgctgggattaaaaccatgctccatcatgcctg 455
Query: 61 tctgaacccaggatttaatacatgctagctagataagtaccactgagataaccctgctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tctgaacccaggatttaatacatgctagctagataagtaccactgagataaccctgctaa 395
Query: 121 atatcacatgttgatctccagtgatctgtatcacagatttgcgtgtcacatgtgacttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atatcacatgttgatctccagtgatctgtatcacagatttgcgtgtcacatgtgacttgg 335
Query: 181 agtacagttcagaaggaagcatcatgtgctgtgtggaatggaccacgcactcaggatgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agtacagttcagaaggaagcatcatgtgctgtgtggaatggaccacgcactcaggatgca 275
Query: 241 gatgcaggtgtgagctctgcacttgaagccagcctggtcttatatagtaagctccagtcc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gatgcaggtgggagctctgcacttgaagccagcctggtcttatatagtaagctccagtcc 215
Query: 301 agccaaggctacacagtgaggctctgtctcacaaaataaaaaaaaaaaaaaaaagaaaag 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 214 agccaaggctacacagtgaggctctgtctcacaaaa-----aaaaaaaaaaaaagaaaag 160
Query: 361 agaagagaagagaaataaatatatatattctaagttctggtgactgcatagtcattattt 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 159 agaagagaagagaaataaatatatatatcctaagttctggtgactgcatagtcattattt 100
Query: 421 atttgaaccccagcagtgactgactgtatagacattatagagtgggtattgtcatagctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 atttgaaccccagcagtgactgactgtatagacattatagagtgggtattgtcatagctc 40
Query: 481 tatgtgcatccacgagtttagggaaatggaatagagggc 519
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 39 tatgtgcatccacgcgtttagggaaatggaatagagggc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
