BAC Information

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BAC

Clone NameMSMg01-437B12
Chromosome5 (Build37)2 (Build37)
Map Location 50,712,629 - 50,713,05854,115,718 - 54,116,214
singlet/doubletsingletsinglet
Overlap geneEG637307
Upstream geneLOC100041659, EG433885, LOC666223, Gpr125
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437B12.T7 (MSMg01no437_b12.b1)MSMg01-437B12.TJ (MSMg01no437_b12.g1)
ACCAG528007AG528008
length760763
length of high quality
(start - end)		430 (73 - 502)498 (78 - 575)
definitionCHROMAT_FILE: MSMg01no437_b12.b1 PHD_FILE: MSMg01no437_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:21 2005CHROMAT_FILE: MSMg01no437_b12.g1 PHD_FILE: MSMg01no437_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:21 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,712,629 - 50,713,058)(54,115,718 - 54,116,214)
sequence
CCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCAGTCAAATGTGTTTCACAATTTAAAATGAACAGTAATATTA
GAAGTGGACCACCACATAAAGATGAATAAACAAGTCTATTTTAAAGTATA
CATTAACCAGCAGATGAGTTTTAACTGGTTGGGGGGCTATATTGAGCTAG
TTTCTGAAAAATAATTTTCTCCTAAGATGTTCAGGTTATGATACTTTATA
TTAACATTTCTCATTCTGACTTCAAAATTTATTTCGTGTGGTTTGGAAGT
GGCTCCATGGTTAAAGTTCTTGCTACATGGCATGATCTGTGTTCAATTCC
CAAGTCCCATGTGCAAGACATGCACAACTGTAACACTAGCCCTAGGTGGT
GGCAGGATAGGGAGGAATCCCTCAACCTCTTGCTGGCTAGCCAGTCTATC
CAAGTGATGAGTTCCGGGATCAGAGAGTGGCCTTGTTTGAAAAATAAGGT
AATGAGGGATGGAGGAAAGACTCTTTATGTTGACCTTTATACTATACACA
CCACATGTATACCCAGTGAGAGTATCTCTCTCCCCAGTCTAGAGCATTCC
CTATATACCGTATTTAGACCGACCTAGAGTAGACTCACTTATCCCCTCAT
CTTTCTCATCCACACTCTCACCCCTTCTTCCTCCCCCCCTTTTATAGCAG
AGAGATTATACAGCGATTAGCGCTTACTGTATACACCCCTCTATTCCACC
TTGGATCTGG

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTGAGAAGTAACCAGCGAT
GTGACTATCAGGAAGCCAGGCAGAGTACACAAGAGACATAATAAGTACAA
AAACCAAAAGAGTGTGAAGAGCCAGAATGGAGAGCATTTCATAGGAGGTA
ACACACAAGTCAAGTTGTGGTTGTCTTGATCAGCAGAAAGACTATTTGAA
CTGTATTGGGAAATGATTTAAAAGTTTTTAAGTTCAAAGTTAATATTATC
ATATTTGGATATTTGAAAGATCACTTTGTTTTTAAAAGACTGGATGCATG
ATATTTTATTTATTGAGAGAAAATAAAATATCTCCTCTATTTCTGCCAAA
AGCATAGAAATGTAAGCTCTAACTATTCCTTGAAATAGCTGATATTAACT
CCTTTAAACTAAATTGCCTGAACAGACTTGTATATATGACCACTTCTATA
ATGCATAATTTAAGTATTACCTAAGTTTTACAAATGAATGTTATCTCCCC
TGTGTGTATACAATAAATGACATACAAATCCTTGTGAAATGTCCCATAAT
GGAGCATTTATTTTTCAGGATTTTATAATTGTTCACCATATGAATGTGGT
GCCACGTAGCTTTAAAATTCTTTCTTGGCACACATTATAATTTCCCTTAA
AAAAATCTCCTTATACTTAAAAAATCCCTCTTGTTTATAACCGGACCTCA
TTAATAGTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_b12.b1 MSMg01no437_b12.b1 CHROMAT_FILE:
MSMg01no437_b12.b1 PHD_FILE: MSMg01no437_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:21 2005
         (430 letters)



>mm_chr5_50712429_50713258
          Length = 830

 Score =  777 bits (402), Expect = 0.0
 Identities = 423/430 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacaatttaaaatgaacagtaatattagaagtggaccaccacataaagatgaataaaca 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacaatttaaaatgaacagtactattagaagtggaccaccacataaagatgaataaaca 260

                                                                       
Query: 61  agtctattttaaagtatacattaaccagcagatgagttttaactggttggggggctatat 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctattttagagtatacattaaccagcagatgagttttaactggttggggggctatat 320

                                                                       
Query: 121 tgagctagtttctgaaaaataattttctcctaagatgttcaggttatgatactttatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagctagtttctgaaaaataattttctcctaagatgttcaggttatgatactttatatt 380

                                                                       
Query: 181 aacatttctcattctgacttcaaaatttatttcgtgtggtttggaagtggctccatggtt 240
           || |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 aatatttctcattctaacttcaaaatttatttcatgtggtttggaagtggctccatggtt 440

                                                                       
Query: 241 aaagttcttgctacatggcatgatctgtgttcaattcccaagtcccatgtgcaagacatg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaattcttgctacatggcatgatctgtgttcaattcccaagtcccatgtgcaagacatg 500

                                                                       
Query: 301 cacaactgtaacactagccctaggtggtggcaggatagggaggaatccctcaacctcttg 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 cacaactgtaacactagccctaggtggtggcaggatagggaagaatccctcaacctcttg 560

                                                                       
Query: 361 ctggctagccagtctatccaagtgatgagttccgggatcagagagtggccttgtttgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggctagccagtctatccaagtgatgagttccgggatcagagagtggccttgtttgaaa 620

                     
Query: 421 aataaggtaa 430
           ||||||||||
Sbjct: 621 aataaggtaa 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no437_b12.g1 MSMg01no437_b12.g1 CHROMAT_FILE:
MSMg01no437_b12.g1 PHD_FILE: MSMg01no437_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:21 2005
         (498 letters)



>mm_chr2_54115518_54116415
          Length = 898

 Score =  930 bits (481), Expect = 0.0
 Identities = 493/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcttgagaagtaaccagcgatgtgactatcaggaagccaggcagagtacacaagagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcttgagaagtaaccagcgatgtgactatcaggaagccaggcagagtacacaagagac 260

                                                                       
Query: 61  ataataagtacaaaaaccaaaagagtgtgaagagccagaatggagagcatttcataggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataataagtacaaaaaccaaaagagtgtgaagagccagaatggagagcatttcataggag 320

                                                                       
Query: 121 gtaacacacaagtcaagttgtggttgtcttgatcagcagaaagactatttgaactgtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaacacacaagtcaagttgtggttgtcttgatcagcagaaagactatttgaactgtatt 380

                                                                       
Query: 181 gggaaatgatttaaaagtttttaagttcaaagttaatattatcatatttggatatttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaaatgatttaaaagtttttaagttcaaagttaatattatcatatttggatatttgaa 440

                                                                       
Query: 241 agatcactttgtttttaaaagactggatgcatgatattttatttattgagagaaaataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatcactttgtttttaaaagactggatgcatgatattttatttattgagagaaaataaa 500

                                                                       
Query: 301 atatctcctctatttctgccaaaagcatagaaatgtaagctctaactattccttgaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 501 atatctcctctatttctgccaaaagcatagaaatgtaagctctaagtattccttgaaatt 560

                                                                       
Query: 361 gctgatattaactcctttaaactaaattgcctgaacagacttgtatatatgaccacttct 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgatattaactcctttgaactaaattgcctgaacagacttgtatatatgaccacttct 620

                                                                       
Query: 421 ataatgcataatttaagtattacctaagttttacaaatgaatgttatctcccctgtgtgt 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataatgcataatttaaatattacctaagttttacaaatgaatgttatctcccctgtgtgt 680

                            
Query: 481 atacaataaatgacata 497
           |||||||||||||||||
Sbjct: 681 atacaataaatgacata 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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