BAC Information

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BAC

Clone NameMSMg01-437F14
Chromosome2 (Build37)11 (Build37)
Map Location 140,618,308 - 140,618,77788,665,007 - 88,665,499
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437F14.T7 (MSMg01no437_f14.b1)MSMg01-437F14.TJ (MSMg01no437_f14.g1)
ACCAG528203AG528204
length790765
length of high quality
(start - end)		481 (45 - 525)493 (74 - 566)
definitionCHROMAT_FILE: MSMg01no437_f14.b1 PHD_FILE: MSMg01no437_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:42 2005CHROMAT_FILE: MSMg01no437_f14.g1 PHD_FILE: MSMg01no437_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:43 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,618,308 - 140,618,777)(88,665,007 - 88,665,499)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGTACCTGCTGGGAAAGGTGAAGCTACATCTGGTTTCAAAAGCT
GAACCAGAGACAAGACAGACAATTTTACACGCAGGACAAGTCCACAGCCC
TCACAAGCATCAAATCTAACTGCCAATTTTAATGACAAAGTTATTCTTCC
TGCAGATGGGTCAGCAATGGATTAAAAAAAAAATCCCATTTTGTCACACC
ATGTGAAGACAACAGCAGGGCACTATCTTAAGAACGAACCATTTCTCGGG
ATTTTAGGCGTCCCAGAAATCAAGGTGGAATGGAGCTGGAAGCTTCTTAC
CTCAGTGACAAATGTGTTAGTTCCAAAAGTTTCATTCATGCTGTGGGGAA
GAAAATTTATCAGTGGCCTCACCTAGCTGTGGACTATGTTTGTTACAATG
TCAACTTGTCCGACAAGATATGTTCACCTGTGCAATATTGTCAACTGTAT
TGTGGTTAATCGACTGCTTTGCCATTGGGTTGTGGGCATTTTTATATGAT
TGGGAATACACATTTGGTACTATAAATCTTATTCNAAAGCCTATGACTGG
TGAGGCTATGGATTAAAGAGGTGGACTCTTGGTTCGCTATTANGCATGAT
TTCCAATGACATTTAAAAATTTATGCCTAATTCCGGAGGAAGAAAACTCC
CGGCCACCAAAAAAACTCCCTTGGGAAAAGATGGGTTTTAAGCGAAAATC
ATACCTGGCCAGGGGGGAAACCAAAAACAGCCCGGGCTCG

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCGGAGCTTTCGTTGTAAGCACGACG
TCCTCTGGAGTTGTTGTTAACGTTTCAGACCTGAGCAATCGGGAAGCGAA
GGCCTATTGTCCGGTTTAGCTAGTGTAAATGTTAGGACGGTCAAGGTCAG
GGCATCACTGTACAGCTGTCAGCTCTGGTTTGACTCCAGGGACTCTTTGA
CCATGTGAACCCCTGGACAGCCACTCTGAGATGATGTCACAAGTCATGAC
CATGGTGATGATGGGAGGCAATTAACTTTGGTCATTCTGAACAGAGCAAT
AAAAACTAACTGCAAATCAGAACTAACCAACTACCACCACCTCCTGATGG
TGATCAGGGAGGGGCAATGATGTCCATCTGTGATAAATATTTACATATTC
ATCATGCACACTACCCTTGTGTCTCTTCCGTTCCTACCAGGTACACGCCT
TACAGTTAAGAATGGTACACAAGCCGGGCATGGTGGACACGCCTTTAATC
CCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCC
TGGTCTACAGAGTGAGTTCCAGGACAGCCAGTGCTACCCAGAGAAACCCT
GTCTCGAAAAAAGCAAAAAAAAATTATAAAAAAAGAATGGTGCCCTAAGT
GTTTTGGTAAGAACTGGTCACTCTGCTGAAAACTGGAAGTTATGAATAAC
TGTGTTAAACCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_f14.b1 MSMg01no437_f14.b1 CHROMAT_FILE:
MSMg01no437_f14.b1 PHD_FILE: MSMg01no437_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:42 2005
         (481 letters)



>mm_chr2_140618308_140619188
          Length = 881

 Score =  886 bits (458), Expect = 0.0
 Identities = 467/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagagtacctgctgggaaaggtgaagctacatctggtttcaaaagctgaaccaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gaattcagagtacctgctgggaaaggtgaagctacatctggtttcaaaagctgaaccaga 411

                                                                       
Query: 65  gacaagacagacaattttacacgcaggacaagtccacagccctcacaagcatcaaatcta 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 410 gacaagacagacaattttacacgcaggacaagtccacagccctcacaagcctcaaatcta 351

                                                                       
Query: 125 actgccaattttaatgacaaagttattcttcctgcagatgggtcagcaatggattaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 actgccaattttaatgacaaagttattcttcctgcagatgggtcagcaatggattaaaaa 291

                                                                       
Query: 185 aaaaatcccattttgtcacaccatgtgaagacaacagcagggcactatcttaagaacgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaaaatcccattttgtcacaccatgtgaagacaacagcagggcactatcttaagaacgaa 231

                                                                       
Query: 245 ccatttctcgggattttaggcgtcccagaaatcaaggtggaatggagctggaagcttctt 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tcatttctcgggattttaggcgtcccagaaatcaaggtggaatggagctggaagcttctt 171

                                                                       
Query: 305 acctcagtgacaaatgtgttagttccaaaagtttcattcatgctgtggggaagaaaattt 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 acctcagtgataaatgtgttagttccaaaagtttcattcatgctgtggggaagaaaattt 111

                                                                       
Query: 365 atcagtggcctcacctagctgtggactatgtttgttacaatgtcaacttgtccgacaaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 atcagtggcctcacctagctgtggactatgtttgttacaatgtcaacttgtccgacaaga 51

                                                             
Query: 425 tatgttcacctgtgcaatattgtcaactgtattgtggttaatcgactgct 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  tatgttcacctgtgcaatattgtcaactgtattgtggttaatcgactgct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no437_f14.g1 MSMg01no437_f14.g1 CHROMAT_FILE:
MSMg01no437_f14.g1 PHD_FILE: MSMg01no437_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:43 2005
         (493 letters)



>mm_chr11_88664807_88665699
          Length = 893

 Score =  930 bits (481), Expect = 0.0
 Identities = 490/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcggagctttcgttgtaagcacgacgtcctctggagttgttgttaacgtttcagacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcggagctttcgttgtaagcacgacgtcctctggagttgttgttaacgtttcagacctg 260

                                                                       
Query: 61  agcaatcgggaagcgaaggcctattgtccggtttagctagtgtaaatgttaggacggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaatcgggaagcgaaggcctattgtccggtttagctagtgtaaatgttaggacggtca 320

                                                                       
Query: 121 aggtcagggcatcactgtacagctgtcagctctggtttgactccagggactctttgacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtcagggcatcactgtacagctgtcagctctggtttgactccagggactctttgacca 380

                                                                       
Query: 181 tgtgaacccctggacagccactctgagatgatgtcacaagtcatgaccatggtgatgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tgtgaacccctggacagccactctgagatgatgtcacaagtcatgaccacggtgatgatg 440

                                                                       
Query: 241 ggaggcaattaactttggtcattctgaacagagcaataaaaactaactgcaaatcagaac 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ggaggcaattaactttggtcattctggacagagcaataaaaactaactgcaaatcagaac 500

                                                                       
Query: 301 taaccaactaccaccacctcctgatggtgatcagggaggggcaatgatgtccatctgtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaccaactaccaccacctcctgatggtgatcagggaggggcaatgatgtccatctgtga 560

                                                                       
Query: 361 taaatatttacatattcatcatgcacactacccttgtgtctcttccgttcctaccaggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaatatttacatattcatcatgcacactacccttgtgtctcttccgttcctaccaggta 620

                                                                       
Query: 421 cacgccttacagttaagaatggtacacaagccgggcatggtggacacgcctttaatccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 cacgccttacagttaagaatggtacacaagccgggcatggtggacacacctttaatccca 680

                        
Query: 481 gcactcgggaggc 493
           |||||||||||||
Sbjct: 681 gcactcgggaggc 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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