BAC Information

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BAC

Clone NameMSMg01-437J08
Chromosome2 (Build37)
Map Location 44,039,845 - 44,227,384
singlet/doubletdoublet
Overlap geneArhgap15
Upstream geneLOC100041228, LOC100041245, Kynu
Downstream geneGtdc1, Zeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437J08.T7 (MSMg01no437_j08.b1)MSMg01-437J08.TJ (MSMg01no437_j08.g1)
ACCAG528381AG528382
length763759
length of high quality
(start - end)		327 (76 - 402)431 (81 - 511)
definitionCHROMAT_FILE: MSMg01no437_j08.b1 PHD_FILE: MSMg01no437_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:01 2005CHROMAT_FILE: MSMg01no437_j08.g1 PHD_FILE: MSMg01no437_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,039,845 - 44,040,171)(44,226,954 - 44,227,384)
sequence
TTCTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGTAATCAGTTCAGGTTTTCCATTTACATTTGGCTACTGCATCCAGAC
ATTAAATCAGAGTTGTGTAACTGCCAACCTTCAAGAACCCCCTAGGAGAT
TTATAAACATCATCTTCTTCATCATCATCATCATCACACCATCACCACAA
TGATAATTAGTAAACAGCTCTTAAAAGCTTGTTAGAAAAACAGAGCAAGC
TTCCTCCCTCCCGCTCGCATTACATTGCACAGCATTCTTTCTCTCCATTC
TGACTTCAAGCAGAAATGCACTGCTGTCTGACAAGATCCCTGCCAGATCC
GCTGCTTAAACGAATACAAATTGATTATCTCCCAGTTTCTGTGGGTCAGA
AGTCTGGGCACAGTTTCGCTGAATGCTCTGTCGTCAAGGTGCCATTCAGG
ACTACATTCTCATCTGGCAGTTTGCCTGTGGATGGGTTCACACGGTCCTT
GCCTAGATTGAGTTTCTGGCGGCTTGTTGGACCGAATGCCTTAGTTTATT
CCCGTCCTCTGCCTGTAGCCTGCATGGACCAATAGGTTCACTCCCAAAAT
GTCATCGTCCGTTATCTAAGTACTTTGGTACCAATTGTATTACTGTTCAT
AAAGAAACTATCAACTCTGACCGTTTGTATATCAGACATTTGCTTCGTTC
CCATCTCTTTTTTCCACTATCCATTTTGTGTCAAAATACCATAGTCTCAC
TCTTTTATCGCCN

NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTTTTTAATAGCTGAGT
AGTACTCCATTGTGTAAATGTATGACATTTTCTGTATCCATTCCTCTGTT
GAGAGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCAAC
AAGCACTCTTAACCACCAAGCCATCTATCTCTTTGGCCTCAAGGACTAGA
ATATCTTTTGACCTTGATAAGAGGTTGAAATTATGCTGGGTGGGACTTTA
TAGTCTGAAAGTCAGCCCACCTTCCTTGTGTGATTAATCCTGTTGCCATA
TCCTTCCCTCCTCAGTGAATAGATGACAATTAAACCTTGCATGTTGCATT
CTCTTTTACTTATTCTCCATAGGGAGCATAGCCCATGATTGCTAGCTCCA
AGAGTAGTGTAAGAAGGCTAACAATAAAATTAAGATTGGGGATTGCTCAT
ATGCTGTTTTGTAACAATGATACAGGCAGTGATGACAGGTACAGAACCTA
TTCTTGAGCAGGATGATAACCTGATTGTTAAAACTCTTACACAAGTGAAT
CGGGGTATTAAACCTGTGGACAATGCTTCTTTTTTTCAACAATCTTTGTA
ATAACTCCGACAGTCCCCGGACATTTTTTATTTTTTTTCTTTTATTCTCC
CACTATCCTTTTTTATTTTCTACTTCCCTTTTTTTCCCTCTCCCCATTAT
ACCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_j08.b1 MSMg01no437_j08.b1 CHROMAT_FILE:
MSMg01no437_j08.b1 PHD_FILE: MSMg01no437_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:01 2005
         (327 letters)



>mm_chr2_44039645_44040371
          Length = 727

 Score =  617 bits (319), Expect = 0.0
 Identities = 325/327 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacatttggctactgcatccagacattaaatcagagttgtgtaactgccaaccttcaag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 ttacatttggctactgcatccagacattaaatcatagttgtgtaactgccaaccttcaag 260

                                                                       
Query: 61  aaccccctaggagatttataaacatcatcttcttcatcatcatcatcatcacaccatcac 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aaccccctaggagatttataaacatcatcttcatcatcatcatcatcatcacaccatcac 320

                                                                       
Query: 121 cacaatgataattagtaaacagctcttaaaagcttgttagaaaaacagagcaagcttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaatgataattagtaaacagctcttaaaagcttgttagaaaaacagagcaagcttcct 380

                                                                       
Query: 181 ccctcccgctcgcattacattgcacagcattctttctctccattctgacttcaagcagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctcccgctcgcattacattgcacagcattctttctctccattctgacttcaagcagaa 440

                                                                       
Query: 241 atgcactgctgtctgacaagatccctgccagatccgctgcttaaacgaatacaaattgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcactgctgtctgacaagatccctgccagatccgctgcttaaacgaatacaaattgat 500

                                      
Query: 301 tatctcccagtttctgtgggtcagaag 327
           |||||||||||||||||||||||||||
Sbjct: 501 tatctcccagtttctgtgggtcagaag 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no437_j08.g1 MSMg01no437_j08.g1 CHROMAT_FILE:
MSMg01no437_j08.g1 PHD_FILE: MSMg01no437_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:01 2005
         (431 letters)



>mm_chr2_44226637_44227467
          Length = 831

 Score =  803 bits (415), Expect = 0.0
 Identities = 427/431 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctttttaatagctgagtagtactccattgtgtaaatgtatgacattttctgtatcca 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 748 attctttttaatagctgagtagtactccattgtgtaaatgtacgacattttctgtatcca 689

                                                                       
Query: 61  ttcctctgttgagagacatctgggttctttccagcttctggctattataaataaggcaac 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttcctccgttgagagacatctgggttctttccagcttctggctattataaataaggcaac 629

                                                                       
Query: 121 aagcactcttaaccaccaagccatctatctctttggcctcaaggactagaatatcttttg 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aagcactcttaaccaccaaaccatctatctctttggcctcaaggactagaatatcttttg 569

                                                                       
Query: 181 accttgataagaggttgaaattatgctgggtgggactttatagtctgaaagtcagcccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 accttgataagaggttgaaattatgctgggtgggactttatagtctgaaagtcagcccac 509

                                                                       
Query: 241 cttccttgtgtgattaatcctgttgccatatccttccctcctcagtgaatagatgacaat 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cttccttgtgtgattaattctgttgccatatccttccctcctcagtgaatagatgacaat 449

                                                                       
Query: 301 taaaccttgcatgttgcattctcttttacttattctccatagggagcatagcccatgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 taaaccttgcatgttgcattctcttttacttattctccatagggagcatagcccatgatt 389

                                                                       
Query: 361 gctagctccaagagtagtgtaagaaggctaacaataaaattaagattggggattgctcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gctagctccaagagtagtgtaagaaggctaacaataaaattaagattggggattgctcat 329

                      
Query: 421 atgctgttttg 431
           |||||||||||
Sbjct: 328 atgctgttttg 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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