Query= MSMg01no437_l10.b1 MSMg01no437_l10.b1 CHROMAT_FILE:
MSMg01no437_l10.b1 PHD_FILE: MSMg01no437_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:11 2005
(571 letters)
>mm_chr2_103065316_103066284
Length = 969
Score = 1064 bits (550), Expect = 0.0
Identities = 566/572 (98%), Gaps = 3/572 (0%)
Strand = Plus / Plus
Query: 1 ttataattcttataatatgaatttgtgtgggaaataatgtttacttgcaccccatgccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttataattcttataatatgaatttgtgtgggaaataatgtttacttgcaccccatgccaa 260
Query: 61 agctgagacatgcctcttcccttgcaactcgctcagagtgtgccttctcttcttgggtgt 120
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgag--atgcttcttcccttgcaactcgctcagagtgtgccttctcttcttgggtgt 318
Query: 121 tattccaccaaaggaagggccaaccctctccagccttaaattcatgtgagaatctctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tattccaccaaaggaagggccaaccctctccagccttaaattcatgtgagaatctctgct 378
Query: 181 cctacgccaactctcgagcactctcaagtccttgtccacttctccatttgttacaagcac 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctacgccaactctcgagcactttcaagtccttgtccacttctccatttgttacaagcac 438
Query: 241 agctgtcaaaacaaacatgtttgcacaataatctaggctataggttattagagaagctgc 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 439 agctgtcaaaacaaacatgtttgcacaacaatctaggctataggttattagagaagctgc 498
Query: 301 cagctgccttacttgcgtgtttgtgttctaactagagggtgggcatctgagagctccctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cagctgccttacttgcgtgtttgtgttctaactagagggtgggcatctgagagctccctt 558
Query: 361 ctctccttgtaatagaaagcattgcttcaaagaggtttactagatgttgtgctaacatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctctccttgtaatagaaagcattgcttcaaagaggtttactagatgttgtgctaacatta 618
Query: 421 actgctttttcttcttttttt-ctttcttttctctttttcctttttattatgctatccga 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 619 actgctttttcttcttttttttctttcttttctctttttcctttttattatgctatccga 678
Query: 480 ccctctatatcaatgaaaatagaaattccgataatattctttgtattccctgaaccttaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccctctatatcaatgaaaatagaaattccgataatattctttgtattccctgaaccttaa 738
Query: 540 attccccagtgagatgctacctttcctaggga 571
||||||||||||||||||||||||||||||||
Sbjct: 739 attccccagtgagatgctacctttcctaggga 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 969
Length adjustment: 10
Effective length of query: 561
Effective length of database: 959
Effective search space: 537999
Effective search space used: 537999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_l10.g1 MSMg01no437_l10.g1 CHROMAT_FILE:
MSMg01no437_l10.g1 PHD_FILE: MSMg01no437_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:12 2005
(468 letters)
>mm_chr2_103233856_103234722
Length = 867
Score = 835 bits (432), Expect = 0.0
Identities = 459/472 (97%), Gaps = 9/472 (1%)
Strand = Plus / Minus
Query: 1 tatgtgttttagttaaatttccatttctctgataagatgtaaacatctggtttgctgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tatgtgttttagttaaatttccatttctctgataagatgtaaacatctggtttgctgatt 608
Query: 61 tagttgttcatgccccaggacttaagccttcctacccactccttccccacaagtgtagga 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 607 tagttgttcatgccccaggacttaagccttcctacccactcc-tccccacaagtgtagga 549
Query: 121 gaaaccagggacataacattgtttcttcactgggatggactgtacatcaggggataaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gaaaccagggacataacattgtttcttcactgggatggactgtacatcaggggataaatg 489
Query: 181 tgtgtaagcatctcttctgttaaggtaggaatacttaattagggagacatctaaagttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgtgtaagcatctcttctgttaaggtaggaatacttaattagggagacatctaaagttta 429
Query: 241 aaccata----ttttagtgcttggagataccatcatgaagggccatcaaataagagtggt 296
||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 428 aaccatagcag----agtgcttggagataccatcatgaagggtcatcaaataagagtggt 373
Query: 297 gctgttatttctgtttagttatccttatcattgcaatgccttgagcatggggaccatgtt 356
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gctattatttctgtttagttatccttatcattgcaatgccttgagcatggggaccatgtt 313
Query: 357 tctccatcttttggtctcagcaggcagtttagaccttttggagcataataagagcttatt 416
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 312 tctccatcttttggtctcagcaggcagtctaggccttttggagcataataagagcttatt 253
Query: 417 aagtgttaaatgaatgataaaaatgtgaagagactttctaagaaccctatag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aagtgttaaatgaatgataaaaatgtgaagagactttctaagaaccctatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 867
Length adjustment: 10
Effective length of query: 458
Effective length of database: 857
Effective search space: 392506
Effective search space used: 392506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
