BAC Information

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BAC

Clone NameMSMg01-437M11
Chromosome2 (Build37)
Map Location 68,688,332 - 68,688,515
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443
Downstream geneLass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437M11.T7 (MSMg01no437_m11.b1)MSMg01-437M11.TJ (MSMg01no437_m11.g1)
ACCAG528530AG528531
length743746
length of high quality
(start - end)
194 (130 - 323)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no437_m11.b1 PHD_FILE: MSMg01no437_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:17 2005CHROMAT_FILE: MSMg01no437_m11.g1 PHD_FILE: MSMg01no437_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATACATCC
GCGGAATTCAGTACTCTCCCTCAATTAAACATAGAGAGGCTCAAAATTCT
CTGAAAAATTAACAGCTGGGTACCATAAGAATCATCTGCCACCTGTATTG
GTCTGTTGTGTATATGTTTGTCTGTCTGCCTGTGTTGCCTGTCTGTCTGT
CTGTCTGTCTGTCTTGTCTGTAAAGATAAGAAAAGAACCAAGTAACCACA
TTCAAGTTGAGAATTGCTTGGCTATCTCCTAATTGACTACACTAGCTAAA
TTACTTCATGCCAAGTGATAGTTTTATTATTCTTAAAAATTCCCACTTAC
TCCATAGTAAAGCTGCTATGAGCCATATACTTGAGGAGAATTATAGCTAC
AACTATCAAATCCAAAGATGCCAAGTAATTGCTATGTTTGGAGAAGCACC
TGACATTGCCAACCCATATGACTTCATGGGCCATGCATGCCAACAAATTG
AATGACACTAATAACAGTGAGTCATAGGTCATGCATCTATCTGCTTCTTT
CCCTCTTTGTCTTTTATGTCTTCACTGATTACACCCTGACTCTATGCAAG
TCATTCTTATCTGTCGCCTTGCGTTACCTCCTTGTCCTTACCCTTGACCG
ACTATATTTATATTTTATCTCCATATTTTAACAGAAATACTTTATTTTGA
ATACCTTTCATCCCCCTTGTAAATAATTCATCTTATGTAGTAC
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAACAGAGGAATCTCGAAAG
ACTGAGAAGCACCTAAAGAAGTGTTCAAAGTCCTTAGTGATCAGAGAAAT
GCAAATTAAAATGACCCTGATCACCTTACACCAATCAGAATGGCTAAGAT
CAAAACCTCAGGTGACAGCACATGCCAGTGAGAATGTGGAGAAAGAGAAA
TGCTCCTCCATTGCTGGTGGGATTGCAAACTGGTACCACCACTCTGGAAA
TCGATCTGGAGGCTCCTCGGAAAATTATAAATGGGTCTACCTGATGACCC
AGAAATACCCTCTTGTGAATATACCCAAAAGATGCCCCACCATCCCACAG
GGGCAAATGTTCCACTGTGTTCATAGCAGCCTTGTTTGTGATAGCCAGAA
TCTGGAAAGAACCCAGATGTCCCATGACAGAAGAATGGAGACAGAAAATG
TAGCTCATATACACAATGGAATACTACTCAGCTATTAAGAATGAGGATAT
CCTGAGTTTTTCAGGCAAATGGATGGAACTAGAAAAGAGCATCCTGATTA
AGGTAGCTCAGACCCAAAAGGACATTCATGGCATGCACTCACTAATATGT
GGAAATTAGCCTTGATAAAAAAATTACCGAATATCCAAGATATCGCTCAT
ACAACTCAAACAGGTTCACAATCTTGAATGGTCCATGTGAGGACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_m11.b1 MSMg01no437_m11.b1 CHROMAT_FILE:
MSMg01no437_m11.b1 PHD_FILE: MSMg01no437_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:17 2005
         (194 letters)



>mm_chr2_68688040_68688633
          Length = 594

 Score =  294 bits (152), Expect = 2e-84
 Identities = 179/192 (93%), Gaps = 8/192 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcatctgccacctgtattggtctgttgtgtatatgtttgtctgtctgcctgtgttgcc 60
           |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 476 aatcatctgccacctgtattggtctggtgtgtatatgtctgtctgtctgcctgtgttgcc 417

                                                                       
Query: 61  tgtctgtctgtctgtctgtctgtcttgtctgtaaagataagaaaagaaccaagtaaccac 120
           ||     |   ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 416 tg-----c---ctgtctgtctgtcttgtctgtaaagataagaaaagaaccaagtgaccac 365

                                                                       
Query: 121 attcaagttgagaattgcttggctatctcctaattgactacactagctaaattacttcat 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 364 attcaagttgagaattgcttggctatctcctaattgactacactggctaaattacttcat 305

                       
Query: 181 gccaagtgatag 192
           ||||||| ||||
Sbjct: 304 gccaagtaatag 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)