BAC Information

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BAC

Clone NameMSMg01-438A05
Chromosome2 (Build37)
Map Location 155,003,938 - 155,199,601
singlet/doubletdoublet
Overlap geneItch, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1
Upstream geneU46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, LOC100043877
Downstream geneTrp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438A05.T7 (MSMg01no438_a05.b1)MSMg01-438A05.TJ (MSMg01no438_a05.g1)
ACCAG528707AG528708
length757769
length of high quality
(start - end)
564 (63 - 626)491 (65 - 555)
definitionCHROMAT_FILE: MSMg01no438_a05.b1 PHD_FILE: MSMg01no438_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:36 2005CHROMAT_FILE: MSMg01no438_a05.g1 PHD_FILE: MSMg01no438_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,199,038 - 155,199,601)(155,003,938 - 155,004,428)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACGAG
ATTTTCTCCGTGTTGTGAACTCTATGTGGATACTGGGGACAGGACCTGGG
GTCTTTAAGAGCAAAAAGTCCTCTTAATTGTTGAGTCATCTCTCCAGCTC
CATTCTGTTAACCTATATTTGGAGGAATAGCCTAAAAGCCTGAAGGCGCA
TGAGAAAGTTATTTAGAAATCATCTGATTCCTTATGTTTGCAGGGGAAGA
GCGTGAAGCTTGGCCAAAGGGGAACAGGGTTTCAGCCTTCAGTGTGTGCC
TTTCAACCGTCTCCTCCTATAGCTCAAACTCAGTCAACCTTTATGCTCTC
AATACCTAGCCCCTAAAGCTAACAGAACTGTGGTGTATTTGTGCAACAGA
CTCCTACTCAGAAAAAAAAAGAGGAAGGCTCTTCTAATGCCTGCCACAAA
CCTAGATGAATTTAAAAAAATGCTGAGTAGAAGCCAGACACAAAAATGAC
ACATTGCACAACTACATTTTTATGAAATTCTAGAGCAGACAAGTTATATA
AACAGACAGACAGCAGATCCCTAGTTGTCCAAAGGTGGGCAGAAGGTGAT
GGTATAGGGAGTGAGGACCACCACAGTAATGCCTGGATACATATGTCCAC
ATGTGTGCATGTGTACCCACACATGTGTGCAACCACTCATATACCTATAC
CCACACACACCCTAACACCTGATGTTAAATCCCATCTTAGCCTCCCAATT
ATCCTAT
GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGCCCAATTCCCCTGACAGTAAAAGCTGGGTCTACAAGCTTA
CTAGCTGTCTCCATTCCCGGATGGGAAGACCCCTGCATGCAGGAAATTCT
GTTGAGTAAACATCTTGCTTTTGCATCCTATTTGAGTCTGGGGTATCGTT
CTTCAGTGATTCTTAGACTCCAACATGTTCAACTGGAGTACTATGCAGTT
TTCAGTTTTCTGTCTTTTTCAGTGTCCACAGACTGATTTTAACACCTTAC
ACAGTCCTGACAGAGTCCTAGGAATCCTTCCTGTGAATAGAACTAGAAGA
ATGCATAAACATACGGCATCCATTTCGGCCTCTTTGAAACTTACTTGTTT
TTTCAGACAGAGTCTTGTTCCTCTCAGAGAATTCTTAGTGTCTTTGCATT
TTCTCTGATTTTTTTCCCCAAGCTCTTTTATATAAAGGGTTATTAATAGC
TCTGTTATTTTGGAGTTGTTTTTGTATTGTCTGTACCTTTCTCCCATATT
TCAGATGAANTATATGGTTAAAAGCTGTGTGTGAAGGTGCACACTACTCC
TTCCGAGGCTGAGGGGTAAGCACGAGGAATCACTGCTCGTTTGTTGAGTT
ATATTCAAAAAAATGCAATAACGATGTGTGATCCGACCTACCTTACTAAC
CTCCGACTTATTAACGCTATGTCTTTTGTTAATAATCGAAGAATTTTAGT
CTCTCTGTTTTTTCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_a05.b1 MSMg01no438_a05.b1 CHROMAT_FILE:
MSMg01no438_a05.b1 PHD_FILE: MSMg01no438_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:36 2005
         (564 letters)



>mm_chr2_155199005_155199968
          Length = 964

 Score = 1067 bits (552), Expect = 0.0
 Identities = 561/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtgaactctatgtggatactggggacaggacctggggtctttaagagcaaaaagtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttgtgaactctatgtggatactggggacaggacctggggtctttaagagcaaaaagtcct 538

                                                                       
Query: 61  cttaattgttgagtcatctctccagctccattctgttaacctatatttggaggaatagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cttaattgttgagtcatctctccagctccattctgttaacctatatttggaggaatagcc 478

                                                                       
Query: 121 taaaagcctgaaggcgcatgagaaagttatttagaaatcatctgattccttatgtttgca 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 477 taaaagcctgaaggcgcatgagaaaattatttagaaatcatctgattccttatgtttgca 418

                                                                       
Query: 181 ggggaagagcgtgaagcttggccaaaggggaacagggtttcagccttcagtgtgtgcctt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggggaagagtgtgaagcttggccaaaggggaacagggtttcagccttcagtgtgtgcctt 358

                                                                       
Query: 241 tcaaccgtctcctcctatagctcaaactcagtcaacctttatgctctcaatacctagccc 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcaaccgtctcctcctagagctcaaactcagtcaacctttatgctctcaatacctagccc 298

                                                                       
Query: 301 ctaaagctaacagaactgtggtgtatttgtgcaacagactcctactcagaaaaaaaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctaaagctaacagaactgtggtgtatttgtgcaacagactcctactcagaaaaaaaaaga 238

                                                                       
Query: 361 ggaaggctcttctaatgcctgccacaaacctagatgaatttaaaaaaatgctgagtagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggaaggctcttctaatgcctgccacaaacctagatgaatttaaaaaaatgctgagtagaa 178

                                                                       
Query: 421 gccagacacaaaaatgacacattgcacaactacatttttatgaaattctagagcagacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gccagacacaaaaatgacacattgcacaactacatttttatgaaattctagagcagacaa 118

                                                                       
Query: 481 gttatataaacagacagacagcagatccctagttgtccaaaggtgggcagaaggtgatgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 gttatataaacagacagacagcagatccctagttgtccaaaggtgggcagaaggtgatgg 58

                                   
Query: 541 tatagggagtgaggaccaccacag 564
           ||||||||||||||||||||||||
Sbjct: 57  tatagggagtgaggaccaccacag 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no438_a05.g1 MSMg01no438_a05.g1 CHROMAT_FILE:
MSMg01no438_a05.g1 PHD_FILE: MSMg01no438_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:37 2005
         (491 letters)



>mm_chr2_155003738_155004628
          Length = 891

 Score =  949 bits (491), Expect = 0.0
 Identities = 491/491 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcccctgacagtaaaagctgggtctacaagcttactagctgtctccattcccggatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcccctgacagtaaaagctgggtctacaagcttactagctgtctccattcccggatgg 260

                                                                       
Query: 61  gaagacccctgcatgcaggaaattctgttgagtaaacatcttgcttttgcatcctatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagacccctgcatgcaggaaattctgttgagtaaacatcttgcttttgcatcctatttg 320

                                                                       
Query: 121 agtctggggtatcgttcttcagtgattcttagactccaacatgttcaactggagtactat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctggggtatcgttcttcagtgattcttagactccaacatgttcaactggagtactat 380

                                                                       
Query: 181 gcagttttcagttttctgtctttttcagtgtccacagactgattttaacaccttacacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagttttcagttttctgtctttttcagtgtccacagactgattttaacaccttacacag 440

                                                                       
Query: 241 tcctgacagagtcctaggaatccttcctgtgaatagaactagaagaatgcataaacatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctgacagagtcctaggaatccttcctgtgaatagaactagaagaatgcataaacatac 500

                                                                       
Query: 301 ggcatccatttcggcctctttgaaacttacttgttttttcagacagagtcttgttcctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcatccatttcggcctctttgaaacttacttgttttttcagacagagtcttgttcctct 560

                                                                       
Query: 361 cagagaattcttagtgtctttgcattttctctgatttttttccccaagctcttttatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagagaattcttagtgtctttgcattttctctgatttttttccccaagctcttttatata 620

                                                                       
Query: 421 aagggttattaatagctctgttattttggagttgtttttgtattgtctgtacctttctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagggttattaatagctctgttattttggagttgtttttgtattgtctgtacctttctcc 680

                      
Query: 481 catatttcaga 491
           |||||||||||
Sbjct: 681 catatttcaga 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)