BAC Information

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BAC

Clone NameMSMg01-438K14
Chromosome2 (Build37)
Map Location 23,064,484 - 23,064,726
singlet/doubletsinglet
Overlap gene4931423N10Rik
Upstream geneMyo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1
Downstream geneLOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438K14.T7 (MSMg01no438_k14.b1)MSMg01-438K14.TJ (MSMg01no438_k14.g1)
ACCAG529203AG529204
length763782
length of high quality
(start - end)
563 (68 - 630)247 (69 - 315)
definitionCHROMAT_FILE: MSMg01no438_k14.b1 PHD_FILE: MSMg01no438_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:31 2005CHROMAT_FILE: MSMg01no438_k14.g1 PHD_FILE: MSMg01no438_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAACCAAGTATTACCAAAAAGAACTATGCAAAGAATCAACAAAACCTAG
AGCTGGTTCTTAGAAAAATATCAACAAGATAGATAACTCCTTAGCCAGAT
TTGCCATAGGGCACAGAAACAGTATTCATATTATCAAAATCAGGAATGAA
AAGGGAGACAAAACAACAGAAACTGAAGAAATTCAAGAACTCATGAGATC
CTACTACAAAAGCCTATACTCAACAAAACTGGAAAATCTAGATGAAATGG
ATGATTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAAGATCAGATA
AACTATCTATACAGTCCCATACCTCCTAAAATAATATGAACAGTCATTAA
AAGTCTTTCAACTAAAAAAAGCTCAGGGCCACATGGTTTTAGTGCAGAAT
TCTATCAGAACTTCAAATAAGACCTAATACCAATACTCTTCAAACTATTC
CACAAAATAGAGACAGAAGAAACACTACTTAATTTGGTCTATGAAGTCAC
AATTACACTGATACCTAAACCACACAATGACACAACAAAGAAAGAGAACT
TTAGACCAGTTTCCCTTATAATATTGATGCAAAAATAGTCAACAAAATTC
TCCCAAACAGAATCCCAGAACACATCANAATGATCATTCACCATGATCAA
GTAGGCTTTATCCTATGGAAGCAGGGATGGTTCAAAATACAGAAATCCAT
CCAAGTGATCAAN
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTAAATATTTTACCTTGAAGAAGGCATAGAC
AGACATAGAGGAATGTTAGCCTAGTCATATATAGCTTGCTATGCTAAGTG
ACAAAGCAGTTTGATTGCATCTAAACAAGCATTGATTGGAAGCTTAAATT
AACAAACTATACGTACAAATCTAATGTATTATTTTCAAGTATTTAAATTG
CCGATGAATTTTCCTCTTTTTTACTCATTAAATCAGCAGTCAGTTCTGCT
ACCTTTTAATACAGATCCTTATGTTGTGGTGACCCCAACCATAAAATTAT
TTTTGTTGTTACTTCATAATGGTAATTTGATATTGTTATGAATCATAATC
TGTGTTTTCTGCCCCCCCCACGCTACCCCTGTGAAAGGGTCGTTTTGATC
CTTCACAGCATATGAATCACTGACATACATGTTCAATTTGAACTTTCGTT
CCCTACGCATCTTTTTATCCCTTTCCATTCTATTTTCCGCGTTAGACAAT
ATCCTCTCACTTATACTCTCGCTCTCCCCCCTGATATCGCCCTCTTCTGC
TTCTTGTCTCTCTTATCCCTATCTCCCTCGCTCCCATTCTTTCTTCTGTA
CCCTATCCTTCTTTTCCTCCTTCTTCCACCTTCTCCTTTCTCTCCTCTTC
CTCCCATCCTCTCTTTTCCTCTCCCCCCTATTCTCTTACTCTCTTCTTCT
CTTCCCTCCTCCTTCCTTCCCCTTCTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_k14.g1 MSMg01no438_k14.g1 CHROMAT_FILE:
MSMg01no438_k14.g1 PHD_FILE: MSMg01no438_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:31 2005
         (247 letters)



>mm_chr2_23064280_23064926
          Length = 647

 Score =  416 bits (215), Expect = e-121
 Identities = 236/243 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   aatattttaccttgaagaaggcatagacagacatagaggaatgttagcctagtcatatat 64
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 aatattttaccttgaagaaggcatagacagacatagaggaatattagcctagtcatatat 264

                                                                       
Query: 65  agcttgctatgctaagtgacaaagcagtttgattgcatctaaacaagcattgattggaag 124
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 265 agcttactatgctaagtgacaaaccagtttgattgcatctaaacaagcattgattggaaa 324

                                                                       
Query: 125 cttaaattaacaaactatacgtacaaatctaatgtattattttcaagtatttaaattgcc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 325 cttaaattaacaaactatacgtacaaatctaatgtattattttcaagtatttaacttgca 384

                                                                       
Query: 185 gatgaattttcctcttttttactcattaaatcagcagtcagttctgctaccttttaatac 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgaattttcctcttttttactcattaaatcagcagtcagttctgctaccttttaatac 444

              
Query: 245 aga 247
           |||
Sbjct: 445 aga 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)