Query= MSMg01no439_a21.b1 MSMg01no439_a21.b1 CHROMAT_FILE:
MSMg01no439_a21.b1 PHD_FILE: MSMg01no439_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:03 2005
(529 letters)
>mm_chr2_29755928_29756856
Length = 929
Score = 936 bits (484), Expect = 0.0
Identities = 505/512 (98%)
Strand = Plus / Plus
Query: 18 atcctgagtgctgggattaaaaaggcatggccacctcttgcaccaccatgtgtttgtttg 77
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 218 atcctgagtgctgggattaaaaaggcatggccaccacttgcaccaccatgtgtttgtttg 277
Query: 78 tttctttttctcttttttaaaaggttgagtgtctttatgttgcctgatctgatcttgaac 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tttctttttctcttttttaaaaggttgagtgtctttatgttgcctgatctgatcttgaac 337
Query: 138 tcctcttccagaagtctcagcctccccagtagctgggactattcaggcacacagcacaca 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcctcttccagaagtctcagcctccccagtagctgggactattcaggcacacagcacaca 397
Query: 198 aacctagccttctttataacttaacattctaacccatgcctttttcaatgttagaaattc 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aacctagccttctttataacttaacattctaacccatgcctttttcaatgttagaaattc 457
Query: 258 ttcaaaaccatcatttatacttgggcaggtaatgtttccttcaggagggtctggagtggt 317
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 458 ttcaaaaccatcatttagacttgggcaggtaatgtttccttcaggagggtctagagtggt 517
Query: 318 tgattcctgggcaggagctctgggttgccattgcagtgtgtcggctctgccagccacttt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 518 tgattcctgggcaggagctctgggttgccattgcagtgtgtcggctctgccagtcacttt 577
Query: 378 ggcagtcagcaaaactccacagagcaaataagtacacttctgtccgaggctcggccttag 437
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 578 ggcagtcagcaaaactccacagagcaaataagtacacttccgtccgaggcttggccttag 637
Query: 438 cagcttatctatctctcactcctttgcatcagaatccacctcattgcctggagatcacac 497
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cagcttatctatctttcactcctttgcatcagaatccacctcattgcctggagatcacac 697
Query: 498 caccatcttcagaaaagctggtctcggtgatg 529
||||||||||||||||||||||||||||||||
Sbjct: 698 caccatcttcagaaaagctggtctcggtgatg 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_a21.g1 MSMg01no439_a21.g1 CHROMAT_FILE:
MSMg01no439_a21.g1 PHD_FILE: MSMg01no439_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:04 2005
(451 letters)
>mm_chr2_29938306_29939153
Length = 848
Score = 826 bits (427), Expect = 0.0
Identities = 444/451 (98%), Gaps = 3/451 (0%)
Strand = Plus / Minus
Query: 1 actgtttcagctagacttggctggccagcgagtctggagaacccatgtctctgtacggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 actgtttcagctagacttggctggccagcgagtctggagaacccatgtctctgtacggcc 770
Query: 61 agccgtgaacttagagacacaccaagccacacatgatttttacacagatcctggggattt 120
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 769 agccatgaacttagagacacaccaagccacacatggtttttacacagatcctggggattt 710
Query: 121 gaactcaggtcctcatgcttccacagtaaacactttacccactgagccatcaccccaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaactcaggtcctcatgcttccacagtaaacactttacccactgagccatcaccccaacc 650
Query: 181 caaaatgtcagtcctaaagatcccctgttagaggtcaggggtcagtaggaacctgggcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 caaaatgtcagtcctaaagatcccctgttagaggtcaggggtcagtaggaacctgggcaa 590
Query: 241 agagccgcccctgaggcaccagactgagagaaagctggtgacaggcattgtccaggaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agagccgcccctgaggcaccagactgagagaaagctggtgacaggcattgtccaggaagt 530
Query: 301 cctcaagcttcagaaacgccacaccacacaactgtcgccagtcccgccagtgaaccccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cctcaagcttcagaaacgccacaccacacaactgtcgccagtcccgccagtgaaccccaa 470
Query: 361 tctccagttcgcgagcctatgtggaaaagaccaggctcagccctcacctgagtgcccccc 420
||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 469 tctccagctcgcgagcctatgtggaaaagatcaggctcagccctcacctgagtg---ccc 413
Query: 421 ccccccgtaccccacagctaaccctaaccac 451
|||||||||||||||||||||||||||||||
Sbjct: 412 ccccccgtaccccacagctaaccctaaccac 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 848
Length adjustment: 10
Effective length of query: 441
Effective length of database: 838
Effective search space: 369558
Effective search space used: 369558
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
