BAC Information

Click to search

BAC

Clone NameMSMg01-439B14
Chromosome2 (Build37)
Map Location 143,912,652 - 143,913,084
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik
Downstream geneLOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439B14.T7 (MSMg01no439_b14.b1)MSMg01-439B14.TJ (MSMg01no439_b14.g1)
ACCAG529537AG529538
length824751
length of high quality
(start - end)
308 (44 - 351)432 (69 - 500)
definitionCHROMAT_FILE: MSMg01no439_b14.b1 PHD_FILE: MSMg01no439_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:07 2005CHROMAT_FILE: MSMg01no439_b14.g1 PHD_FILE: MSMg01no439_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACTATTTTCCCTGCCTAAACATGATCTGAACAATGCTAACTGGGT
GAGGGATTTTCAGGAGTTCTTAACCCTACACAAAGAAGTTCAGACAACTA
AGGAGTGCTGAGAGAATAGAAGTCTCCCCTGGGGAGGGAAACACTGGTTA
TCCAATACCAAATAGTCAGCCCCGTACACATACAAGTAACTTGGATAGAC
TCAGCAAGTTGTATCTAGGAGTGTATGTGTAACAATAATGAAAAGAGTGG
CTGGGAATTTGAAGAATATTTTGTATATAGGAGTGTTTGGAGGAAGGCCA
TAGGCNTCTTTTTCCTCTCCTTTTTTTTTTTTGCCTTCGCGCCCTTTCGT
TGGNGCGCATTTCCACCCCCCCTTCCTCTTTCCCCTCGTTTTCCTTTCCC
CATCTATTTTATACCCTTTTTATCGGTCTTACCCCCTTTCCCCCTTTTTT
CACCTTCTCCCTATTTTTTCTTTTTTTTATACGCCCACTACTCTCCTCTT
TTTCTTCTTTACTATTCGTTTTCCCCTCTTTTCCTCCCTTTTTTTTCTTT
TTCCCTTCTTCCTTTACACTTTTTTACTATTTGTTCGTAAAGCGCCATGC
TCCACTCATTTTCTCCTTTTCCTTTTATAATTCCCCGTTTTTTTTCTCTT
TCCCCCTCCTCTCCTCTCCCTTTTCAACTTTTTCTTCCCAATCTTTATTT
CTCCGCCGCCCCCCTCCTTATTTTTATACCCCCCCTCTATTATTTTTTTC
TACCCCTCCCCCTCCTTTCTTTCC
GCTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTAGGGGGAAATGGCTGTTAGAGCCCAAAT
GTGTTCTCTAAATCTTCTCTGAAGATGTGTATGTGGTGGCTAAGCTATGC
AATATGGTCTTTATAAACAAAACGAGACCAAAAAAAAAAAATTCTAATGT
TCACACAGAAAGAACAGGACTCCTCCGCAGTTCGATGAGTTTCCAGAAGC
AAACACTCCCCGGGTAGCGGTCTAGGGGCGACACATCCAGGTAAGCTCTG
TTTAGATCAACTTACGACCCCTGGCCACCCACGTCCTCATAGACCCCTCT
CAGAGTCTGCTTCCCACACTATGCTGACACGCAGCAGCTGATACTGGGCT
AGACTGCTCTTGAACTTGGGGCTCATGTGTTCTCCCGTGTCTGGCTTCTC
TCAGTGTGAGGCATGTTATTGCAGTACCAACAGTTCCGGTTTTTGTTTGG
CCGGCTTTGGCTTTTTGCGGCTGGCCCTCATTCCACTTCCCGAATATTTT
AACCTATTTTATTCCCTTTACTATGGTCTGCTTGTTAACCCCCCCTTTTT
CTTGTTCCCCTCTGTTCCCACCCATCCCCTCTCTGCTTAACCTTTTTTAA
CACCCACCTAACTCCCGTCCCCCTATTTCTTTCTTTTTTCTTTCCCACCC
CCCCCCCTTTTTCTATCCCTTTTTCTCTTTTTTCTTCCCCCTTTTTTGTC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_b14.g1 MSMg01no439_b14.g1 CHROMAT_FILE:
MSMg01no439_b14.g1 PHD_FILE: MSMg01no439_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:07 2005
         (432 letters)



>mm_chr2_143912452_143913284
          Length = 833

 Score =  729 bits (377), Expect = 0.0
 Identities = 419/433 (96%), Gaps = 1/433 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttagggggaaatggctgttagagcccaaatgtgttctctaaatcttctctgaagatgt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttggggggaaatggctgttagagcccaaatgtgttctctaaatcttctctgaagatgt 260

                                                                       
Query: 61  gtatgtggtggctaagctatgcaatatggtctttataaacaaaacgagaccaaaaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatgtggtggctaagctatgcaatatggtctttataaacaaaacgagaccaaaaaaaaa 320

                                                                       
Query: 121 aaattctaatgttcacacagaaagaacaggactcctccgcagttcgatgagtttccagaa 180
           |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct: 321 aaattctaatgttcacacagaaagcacaggactcctcagtagttcgatgagtttccagaa 380

                                                                       
Query: 181 gcaaacactcccc-gggtagcggtctaggggcgacacatccaggtaagctctgtttagat 239
           |||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaatcactccccggggtatcagtctaggggcgacacatccaggtaagctctgtttagat 440

                                                                       
Query: 240 caacttacgacccctggccacccacgtcctcatagacccctctcagagtctgcttcccac 299
           ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacagactacccctggccacccacgtcctcatagacccctctcagagtctgcttcccac 500

                                                                       
Query: 300 actatgctgacacgcagcagctgatactgggctagactgctcttgaacttggggctcatg 359
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 actatgctgacacgcagcagctgagactgggctagactgctcttgaacttggggctcatg 560

                                                                       
Query: 360 tgttctcccgtgtctggcttctctcagtgtgaggcatgttattgcagtaccaacagttcc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 tgttctcccgtgtctggcttctctcagtgtgaggcatgttattgcagtagcaacagttcc 620

                        
Query: 420 ggtttttgtttgg 432
           || ||||||||||
Sbjct: 621 gggttttgtttgg 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 833
Length adjustment: 9
Effective length of query: 423
Effective length of database: 824
Effective search space:   348552
Effective search space used:   348552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)