BAC Information

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BAC

Clone NameMSMg01-439I11
Chromosome2 (Build37)
Map Location 110,931,776 - 110,932,318
singlet/doubletsinglet
Overlap geneLOC668802
Upstream geneLOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439I11.T7 (MSMg01no439_i11.b1)MSMg01-439I11.TJ (MSMg01no439_i11.g1)
ACCAG529860AG529861
length720762
length of high quality
(start - end)		549 (42 - 590)239 (73 - 311)
definitionCHROMAT_FILE: MSMg01no439_i11.b1 PHD_FILE: MSMg01no439_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:40 2005CHROMAT_FILE: MSMg01no439_i11.g1 PHD_FILE: MSMg01no439_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCGCGGAAT
TCTTAGTTTCTCCCTACCTTGACTTTTTCTGCTTGTACCTCAGCAGTAAC
TATAGTCCTTCCAGAAGGAAATACTTATCATTTAATGACATGTATTATAA
AGTATGAAATTATAACCTATTTTTCCCACTGAGAAGTTTTAAAACATAAT
CCTATTTGTTCTACATCACATTGTTTTTGAAAAAAGAAAACATGTTTCTG
TTAGACTTTTAAATTGACTATTTACGTACCAATGGCTGGTTATTTTTGCT
GCCATCACACAGGTTCTGATCATCTTCTAACATCACTGTTCATAATTAAT
AAACATCTTAGTTATACCACAAATGACATTAAAGAAAACAGCATAGATTG
TAATGATAGTTAAATATTTTTTAAATTTGCAATAATAAATCCTTTCTAAT
TCCCCATTTGAGTATTTCAACTCAGCTTATTTATCTTTATCTGAGATTAT
ATTAAGAGATATTTCTAATAATCTAAAACTTTGATACACTCCTTTGAGAC
ACACAAAATATTTCTTGGTTTTAAGCCAATAGAATTGAAAGATTTACTCA
CAGTTGTATCTACCTGACATATACAACCAAGACCTTTATTTTTAATTTTA
AAAATAATATTAAATATAAAGTCCTATATACTTATGAATTCTTATGTACC
CTATTCCATACTTTGAAACT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCGAGAAAATCTCTCAGACCTTCAAAGAAGAGGTATTATC
AATACTCTTTGGAACAAGAAGGGGGAACAAAATACTCAAAAGAGAAAATA
CAGAGACATAATGTGGAATAGAGAGTGAAGGAAAGGTCATCCAGAGACTG
CCCAATATAGGGATCCATCCAATATACAGTCACCAACACAGGCACTATTG
TGGATGCCAAGAACTGCTTACTTACAAGAACCTGATATAGCTGTCTCCTG
GGAGGCTATGCTCTGATCNTTCGAANACAGAGGNGATGCTCACAGNCAAT
CGTTGGATTGAGCACAGGGTCTCCAATGGAGGTGTTAGAGAAAGGACTGA
AGGAGATGAAGGGCCCCCCTTTTTTCTATGCTGACCCCCTATCCCCCATC
CCTCCGTCCCGACCGATCTCCCCCCTCCTTTATTACCCCCCTACAGAGCT
CTCCATGCTATGGACTTTTGCCCTTTTTTCTTCCGCCGCCCCCTATGTTT
TACGCCTCCCCTCTTCGCCTGCCTGTTGTTCGCCGGACTTGCGCTTTCCC
CCTTCCCCCCCCCCTTTCTCCCTCGCTACTCTTTCCCTCTTCCCCTTTCC
CCTTTACCTTTTTTTTTTTTTTTCCCTCAACCCCTCGCCCCCTCTATTTT
CTTTTTTTATTCCCTTTTAATACTCAAACATGCCCTTTCTCTATTTCGCC
CCCTTTATTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_i11.b1 MSMg01no439_i11.b1 CHROMAT_FILE:
MSMg01no439_i11.b1 PHD_FILE: MSMg01no439_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:40 2005
         (549 letters)



>mm_chr2_110931571_110932518
          Length = 948

 Score = 1007 bits (521), Expect = 0.0
 Identities = 539/545 (98%), Gaps = 3/545 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttagtt-tctccctaccttgactttttctgcttgtacctcagcagtaactatag 64
           |||||||||||| | | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttagttgt-tacctaccttgaatttttctgcttgtacctcagcagtaactatag 264

                                                                       
Query: 65  tccttccagaaggaaatacttatcatttaatgacatgtattataaagtatgaaattataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccttccagaaggaaatacttatcatttaatgacatgtattataaagtatgaaattataa 324

                                                                       
Query: 125 cctatttttcccactgagaagttttaaaacataatcctatttgttctacatcacattgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctatttttcccactgagaagttttaaaacataatcctatttgttctacatcacattgtt 384

                                                                       
Query: 185 tttgaaaaaagaaaacatgtttctgttagacttttaaattgactatttacgtaccaatgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgaaaaaagaaaacatgtttctgttagacttttaaattgactatttacgtaccaatgg 444

                                                                       
Query: 245 ctggttatttttgctgccatcacacaggttctgatcatcttctaacatcactgttcataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctggttatttttgctgccatcacacaggttctgatcatcttctaacatcactgttcataa 504

                                                                       
Query: 305 ttaataaacatcttagttataccacaaatgacattaaagaaaacagcatagattgtaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaataaacatcttagttataccacaaatgacattaaagaaaacagcatagattgtaatg 564

                                                                       
Query: 365 atagttaaatattttttaaatttgcaataataaatcctttctaattccccatttgagtat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atagttaaatattttttaaatttgcaataataaatcctttctaattccccatttgagtat 624

                                                                       
Query: 425 ttcaactcagcttatttatctttatctgagattatattaagagatatttctaataatcta 484
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtcaactcagcttatttatctt-atctgagattatattaagagatatttctaataatcta 683

                                                                       
Query: 485 aaactttgatacactcctttgagacacacaaaatatttcttggttttaagccaatagaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaactttgatacactcctttgagacacacaaaatatttcttggttttaagccaatagaat 743

                
Query: 545 tgaaa 549
           |||||
Sbjct: 744 tgaaa 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 948
Length adjustment: 10
Effective length of query: 539
Effective length of database: 938
Effective search space:   505582
Effective search space used:   505582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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