TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGTGTTTGTACACCACCATTTAATTCACCCCTTTCAGATGAGAAAA
GTGAGACATTACAGTGAATTTGCAATTCCTAGCCATCTACAATTGAAGGA
CAAGATCCAGACTCAGATTATTATATAATTGTTGGCTGAGGAACTCAGAC
ACTCATATAAGAAATTGGCCTACTGCATGCTTCTGGATGATTGCTTGGAG
TCCTCTGATTCTCCCTCTTTTATCCCAAGGTCAAAAATTAAAAAAAAAAA
TCCAATAAAATCAAAAACTGCTGAAAGTCCTGACAGAACAGACAGTGAGG
AAGAAAACTGGCTCTTTAATTATGACGCGCCTTGAGCTGCTTTTACTCCT
TACAGATCTCTGAAGTTGAGCTGCCCCGTACTTTTGAATGCTCCCTGACA
GGTCCCTATGATTTGTATCAGCTCGCGAAATTAANAAAAAAAAAAAAAAG
AATGCAGACTTGCAGCTCTCATTTGCCAGAATCTGTAAGATCTCTTTTAT
CATGCCCCGTTACCTGGATGGAAAGCAGTGTTCTCTTTAAGGGAACCGGG
TCTAACATTTTTTATTCCGGGGGAGAAAAGGGTCTGGAAAACATGAAAAA
AAGGGTTGGAGCACCGGGCCTCCCAAAGGTTAAACTGCCCCCCCCCGCGC
CGTTTGACCCCCTTTTTTTAACCCCCTTAAACAGGGTCTTTTTTTTTTAG
GAAACCAAA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTGAGGGACAGCAGAAAGACTCAAAACAG
GCAACCTCAGGAGATAGATGGTGGGGGACCCTCTAGAATGTACCAGAGAT
CTGGGAGGTGAGAGACTTTCAGGACACAAAGGGAGGGACCATAGATGAAA
TACCCTACAGTAGGGAGAGGGCACTTGTAGAGTCTACTCCAGAAGAAAGA
CAGGACATCAAGTGGAAGGATAGGGTTGCCATCCCACAGTCAAAAACTCT
GACTCAGAGTTGTCTAAAGGATCTGCAGGTACAAAGATGGAGAAAACCCG
AGGATAAGGAGGTCCAGTGACAGGCCCAAACGGAGATCCAGATGGGGGAA
GCCCTAAGGCCTATTTCTCTGTTACTGAAGCTATGGTGTGCTTACAAACA
GAGGCCTATCATGACTGCCCACTGAAAGGTCCAACAAGCAGCTGAAAGAG
TCAAATGCAGATATTTATACCCAACCAATGGACAGAAGCTGGCGACCCAT
GTGTTTGAATTAGGGAAAAGCTGGAAGAAGCTGAGGAGGAGGGCGACCCT
ATAGGAATACCAGCAGTCTCAACTAACCTAGACCCACCCCCTCCCTTACC
CCGTCTCTCAAATGCTGAACCACCCACCAGGCTGCATACCCCAGATGATA
TGAGGCCCTCAACACTTATTACGTG

Query= MSMg01no439_k22.b1 MSMg01no439_k22.b1 CHROMAT_FILE:
MSMg01no439_k22.b1 PHD_FILE: MSMg01no439_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:52 2005
         (441 letters)



>mm_chr2_138830243_138831085
          Length = 843

 Score =  793 bits (410), Expect = 0.0
 Identities = 432/440 (98%), Gaps = 4/440 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtgtttg--tacaccaccatttaattcacccctttcagatgagaaaagtgag 62
           |||||||||||||||  ||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtgtttggatacag-accatttaattcacccctttcagatgagaaaagtgag 263

                                                                       
Query: 63  acattacagtgaatttgcaatt-cctagccatctacaattgaaggacaagatccagactc 121
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 acattacagtgaatttgcaatttcctagccatctacaattgaaggacaagatccagactc 323

                                                                       
Query: 122 agattattatataattgttggctgaggaactcagacactcatataagaaattggcctact 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agattattatataattgttggctgaggaactcagacactcatataagaaattggcctact 383

                                                                       
Query: 182 gcatgcttctggatgattgcttggagtcctctgattctccctcttttatcccaaggtcaa 241
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 gcatgcttctggatgattgcttggagtcttctgattctccctcttttatcccaaggtcaa 443

                                                                       
Query: 242 aaattaaaaaaaaaaatccaataaaatcaaaaactgctgaaagtcctgacagaacagaca 301
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaattaaaaataaaaatccaataaaatcaaaaactgctgaaagtcctgacagaacagaca 503

                                                                       
Query: 302 gtgaggaagaaaactggctctttaattatgacgcgccttgagctgcttttactccttaca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgaggaagaaaactggctctttaattatgacgcgccttgagctgcttttactccttaca 563

                                                                       
Query: 362 gatctctgaagttgagctgccccgtacttttgaatgctccctgacaggtccctatgattt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatctctgaagttgagctgccccgtacttttgaatgctccctgacaggtccctatgattt 623

                               
Query: 422 gtatcagctcgcgaaattaa 441
           ||||||||||| ||||||||
Sbjct: 624 gtatcagctcgtgaaattaa 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 843
Length adjustment: 9
Effective length of query: 432
Effective length of database: 834
Effective search space:   360288
Effective search space used:   360288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)