Query= MSMg01no439_l02.b1 MSMg01no439_l02.b1 CHROMAT_FILE:
MSMg01no439_l02.b1 PHD_FILE: MSMg01no439_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:53 2005
(494 letters)
>mm_chr2_7470141_7471032
Length = 892
Score = 888 bits (459), Expect = 0.0
Identities = 483/491 (98%), Gaps = 4/491 (0%)
Strand = Plus / Plus
Query: 5 gaattcattagaataagagtaaattgcaaggagacagctcagttgctgtcagtgacctga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattagaataagagtaaattgcaaggagacagctcagttgctgtcagtgacctga 264
Query: 65 ctccgtggttctctctaagtacctacttccagagtgggaagcccattatctttctcattc 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 ctccgtggttctctctaagtacctactgccagagtgggaagcccattatctttctcattc 324
Query: 125 aaagtgaatgagaagtcactatttgccagataaatcacttgtcatggccttccttgtaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagtgaatgagaagtcactatttgccagataaatcacttgtcatggccttccttgtaag 384
Query: 185 gtaatgtaactgaggccaaaccaaagctgggcagctcacctgtggatcaagaagcataag 244
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaatataactgaggccaaaccaaagctgggcagctcacctgtggatcaagaagcataag 444
Query: 245 acacatttacattttcttctttttctctactgaccatcccctc-tcccccgttaacattc 303
||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||
Sbjct: 445 acacatttacattttcttctttttctctactgaccgtccc-tcctcccc-gttaacattc 502
Query: 304 acacattctgaagaaatacaaaagcagaatggatgcaaatgtgaaaaaaaatgctggcaa 363
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 503 aaacattctgaagaaatacaaaagcagaatggatgcaaatgtgaaaaaaa-tgctggcaa 561
Query: 364 ataattatagcaattcttgaaatacccaggatggctgggtgaaaactcaatgcttatgca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ataattatagcaattcttgaaatacccaggatggctgggtgaaaactcaatgcttatgca 621
Query: 424 tgaagaaacgaggcagtgttgctaattttagattagaaagtctcttctcttttcccaccc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgaagaaacgaggcagtgttgctaattttagattagaaagtctcttctcttttcccaccc 681
Query: 484 tcctaacttca 494
|||||||||||
Sbjct: 682 tcctaacttca 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 892
Length adjustment: 10
Effective length of query: 484
Effective length of database: 882
Effective search space: 426888
Effective search space used: 426888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_l02.g1 MSMg01no439_l02.g1 CHROMAT_FILE:
MSMg01no439_l02.g1 PHD_FILE: MSMg01no439_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:53 2005
(468 letters)
>mm_chr2_7648207_7649074
Length = 868
Score = 735 bits (380), Expect = 0.0
Identities = 392/396 (98%)
Strand = Plus / Minus
Query: 1 ctgcccttccttctttcagtgcctgtgcttggcatgaatgaacctaatgaacccttccct 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ctgcccttccttatttcagtgcctgtgcttggcatgaatgaacctaatgaacccttccct 642
Query: 61 ctccaacttgcttttttgtcacagtttttcattacagaagtagaaggcaaactagagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ctccaacttgcttttttgtcacagtttttcattacagaagtagaaggcaaactagagcag 582
Query: 121 attctgagttctagaaaaatagaaagtaaattaggtaaatcttctgagtcatatggggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 attctgagttctagaaaaatagaaagtaaattaggtaaatcttctgagtcatatggggca 522
Query: 181 atcaacagtaaattaatatatcccatagggggaatacacaggaaccacatgagagaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atcaacagtaaattaatatatcccatagggggaatacacaggaaccacatgagagaaaga 462
Query: 241 cataatatgtgagaatacaactgtatataataaatacaccccacccttccccttaaggga 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cataatatgtgagaataaaactgtatataataaatacaccccacccttccccttaaggga 402
Query: 301 tcaaacttttattcatctgaaacactcagtaagtgatctacctagcacctaacacatagg 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 401 tcaaacttttattcatctgaaacactcagtaagtgatctacttagcacctaacacatagg 342
Query: 361 aaacactcaataagtgatctacctagcacctaacac 396
||||||||| ||||||||||||||||||||||||||
Sbjct: 341 aaacactcagtaagtgatctacctagcacctaacac 306
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
