Query= MSMg01no440_g05.b1 MSMg01no440_g05.b1 CHROMAT_FILE:
MSMg01no440_g05.b1 PHD_FILE: MSMg01no440_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:49 2005
(504 letters)
>mm_chr2_48102689_48103590
Length = 902
Score = 839 bits (434), Expect = 0.0
Identities = 456/464 (98%), Gaps = 2/464 (0%)
Strand = Plus / Minus
Query: 41 ttctagtgctctaggaaacactctgaccaaggaaccttataaaggaaagaaaatggtatg 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 ttctagtgctctaggaaacactctgaccaaggaaccttataaaggaaagaaaatggtatg 839
Query: 101 agctctgtaacctttaggcccacctcggaacataccttctccaacaaagctacacatcct 160
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 agttctgtaacctttaggcccacctcggaacataccttctccaacaaagctacacatcct 779
Query: 161 atttcttcccaaatatttccaacaactggggaccacatattcaaatacatgaacctatgg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 atttcttcccaaatatttccaacaactggggaccacatattcaaatacatgaacctatgg 719
Query: 221 ggaccattctcattcactctccatagcttttctatgtaaaacaaaataagattctataag 280
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 718 ggaccattctcattcactctccatagctttactatgtaaaacaaaataagattctataag 659
Query: 281 atgcggatcagattggtaaacgacagaatgataaataactataaaatttgaaaaccagat 340
||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 658 atgcggaccagattggtaaacaacagaatgataaataactataaaagttgaaaaccagat 599
Query: 341 ttgacttagcttaatctaggattgggttaggttaacatagaactaacctagctcgctatt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgacttagcttaatctaggattgggttaggttaacatagaactaacctagctcgctatt 539
Query: 401 gttgtcttaaatccgtatagtttctttatgcagaagagctctgcaagtttattttatttt 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 538 gttgtcttaaatccgtatagtttctttatgcagaagagctctgcaagtttatttta--tt 481
Query: 461 tttaacaaaataagaggaatagaagatgtggagataaagaaata 504
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 480 tttaacaaaacaagaggaatagaagatgtggagataaagaaata 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 902
Length adjustment: 10
Effective length of query: 494
Effective length of database: 892
Effective search space: 440648
Effective search space used: 440648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_g05.g1 MSMg01no440_g05.g1 CHROMAT_FILE:
MSMg01no440_g05.g1 PHD_FILE: MSMg01no440_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:49 2005
(506 letters)
>mm_chr2_47960126_47961031
Length = 906
Score = 963 bits (498), Expect = 0.0
Identities = 504/506 (99%)
Strand = Plus / Plus
Query: 1 aactacatccagagtagcaaggagagatccatctgcttttgtgcacataagtgttgtatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactacatccagagtagcaaggagagatccatctgcttttgtgcacataagtgttgtatg 260
Query: 61 aagtctacagagagatgcagagacagaaaaactagaaggtttggactgggtctctaaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtctacagagagatgcagagacagaaaaactagaaggtttggactgggtctctaaggg 320
Query: 121 cagaagggttagaggaggacttgcctatgctttttaaaaataggacatcaaaaattaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagggttagaggaggacttgcctatgctttttaaaaataggacatcaaaaattaaaa 380
Query: 181 acaacatatatgaatatataaaatattcagagcactggaagataccgtctcccatctcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaacatatatgaatatataaaatattcagagcactggaagataccgtctcccatctcaa 440
Query: 241 gggcagcgattattactaagtgaaaaagaaatcattgaaagaatcaatgctgttctaagt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gggcagcgattattactaagtgaaaaagaaatcattgaaagaatcaatgctggtctaagt 500
Query: 301 ctagaccatacggccaatcaaggggcttctgggaaattctcttaagcttacaggggctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagaccatacggccaatcaaggggcttctgggaaattctcttaagcttacaggggctgg 560
Query: 361 gaagggaatgaaactctgcaagctattagaagacacaaggttcttcttccttgtactatg 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 gaagggaatgaaactctgcaagctattagaagacacaaggttcttcctccttgtactatg 620
Query: 421 tggtttctttgtaatccaaaaggatccctggctaaagagtagaccagaaatgtagagatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtttctttgtaatccaaaaggatccctggctaaagagtagaccagaaatgtagagatt 680
Query: 481 ccttgaaaaatcaactgcagctttta 506
||||||||||||||||||||||||||
Sbjct: 681 ccttgaaaaatcaactgcagctttta 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
