BAC Information

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BAC

Clone NameMSMg01-440J18
Chromosome2 (Build37)
Map Location 171,438,818 - 171,567,679
singlet/doubletdoublet
Overlap genenone
Upstream geneDok5, LOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440J18.T7 (MSMg01no440_j18.b1)MSMg01-440J18.TJ (MSMg01no440_j18.g1)
ACCAG530686AG530687
length735736
length of high quality
(start - end)		348 (56 - 403)475 (87 - 561)
definitionCHROMAT_FILE: MSMg01no440_j18.b1 PHD_FILE: MSMg01no440_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:07 2005CHROMAT_FILE: MSMg01no440_j18.g1 PHD_FILE: MSMg01no440_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,438,818 - 171,439,136)(171,567,205 - 171,567,679)
sequence
GTCCTTCTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTGTTTTCTTCCCGGGCAAAGAGCTGCTAAAGGAGC
CACTAGCTAGTTCGGGATGGTTCTCTTCCCACATTTGCTGACATTTCTTC
TTCCCGAGGCTTCTTGGCTCTGACTGGAATCTTCTTCCTCCATTCATCCC
TTTTCTTCTTAGGATCTCATTCCCCTTCCTTCTCCCTCACGCTGTTGTGG
TGACCCTGCCTGACAGCGGCCCTGGATACCTTAGTGACACATAGTCCTCA
CATTCATCTGAAAGGGCCAAGTTCATATCTGCAGTTCATTCTTAATAAGC
CATCTCCCCTGGAGCTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGT
GNNTNNNNNNNNNNNNNNTTTTTTTNTNNNNTTTTTTNNTTTTTTTTTTT
TTTTTTTTTTNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTT
TTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTNTTNTTTT
TTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTN

NCCAATTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAGCTTTAAGCA
AGTTTTGTTTTGTTTTGAACCTCTTAATTCAAAATTGGTGTTTGGAGAAG
TACCTCTTGGAAGGGAAATAGCGGAGATTTAAATTCTTCCATTAGCTATA
CAGTGAATTTAAGACAGGAGAAGGGGCTGCTTCAGGAGAGGAGGTTAAGA
TAAGATTGGTAGGAATGTTCAGAGGGTGTTTAAATGCCCTATTATAAACG
ACTAATATATTCAGTCTTATAAGGAGGCTTGGTAGATCCAAAGGAATAAG
CCGAAGCACGAATGAAAAGGAATTTAAAGTCAAGGAGGCTCTTTAGAGAC
TCCCATGATTAAAAGGTACAGTTCCCGGCCGTAACAACGTGAGGCAAACA
GCTTCCACTCACTGTGTGTGGGCTCCTGTTCGGGCTCCTTCAGTATCTCC
CACTCCACTAGAGGATCTACTGAGCAAGAGGCACCATGTTCTAGAGTGAA
GCTCTTAGCGCTCAGCTAGGTCTCTTCAGAAGGAAGGCCTCTGTCCCCCT
CTTTTTTTTTCAAGTTGTCTTCCCCACCTGGGCCTATATTCCAGCCCCTC
TGGGGGAAAGCGGGGTTTCTGCTTTGGGCTTGTTACACTGGTAACTTGTA
AATTGAACCCCCAAAAATAAAGCCCCTTCTCTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_j18.b1 MSMg01no440_j18.b1 CHROMAT_FILE:
MSMg01no440_j18.b1 PHD_FILE: MSMg01no440_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:07 2005
         (348 letters)



>mm_chr2_171438614_171439361
          Length = 748

 Score =  516 bits (267), Expect = e-151
 Identities = 306/319 (95%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgttttcttcccgggcaaagagctgctaaaggagccactagctagttcgggatg 64
           ||||||||||||| ||  |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattctgttttcatcaagggcaaagagctgctaaaggagccactagcgagttcgggatg 264

                                                                       
Query: 65  gttctcttcccacatttgctgacatttcttcttcccgaggcttcttggctctgactggaa 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 gttctcttcccacatttgctgacatatcttcttcccgaggcttcttggctctgactggaa 324

                                                                       
Query: 125 tcttcttcctccattcatcccttttcttcttaggatctcattccccttccttctccctca 184
           ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| 
Sbjct: 325 tcttcttcctccattcatcccttatcttcttaggatctcatttcccttccttctccctcg 384

                                                                       
Query: 185 cgctgttgtggtgaccctgcctgacagcggccctggataccttagtgacacatagtcctc 244
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgctgctgtggtgatcctgcctgacagcggccctggataccttagtgacacatagtcctc 444

                                                                       
Query: 245 acattcatctgaaagggccaagttcatatctgcagttcattcttaataagccatctcccc 304
           ||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 445 acattcatctgaaagggccaagttcatatctgcggctcattcttagtaagccatctcccc 504

                              
Query: 305 tggagctgtgtgtgtgtgt 323
           |||||||||||||||||||
Sbjct: 505 tggagctgtgtgtgtgtgt 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no440_j18.g1 MSMg01no440_j18.g1 CHROMAT_FILE:
MSMg01no440_j18.g1 PHD_FILE: MSMg01no440_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:07 2005
         (475 letters)



>mm_chr2_171567005_171567879
          Length = 875

 Score =  880 bits (455), Expect = 0.0
 Identities = 470/475 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctagctttaagcaagttttgttttgttttgaacctcttaattcaaaattggtgtttgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cctagctttaagcaagttttgttttgttttgaacctcttaattcaaaattggtgtttgga 616

                                                                       
Query: 61  gaagtacctcttggaagggaaatagcggagatttaaattcttccattagctatacagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaagtacctcttggaagggaaatagcggagatttaaattcttccattagctatacagtga 556

                                                                       
Query: 121 atttaagacaggagaaggggctgcttcaggagaggaggttaagataagattggtaggaat 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 555 atttaagacaggagaaggggctgcttcaggggaggaggttaagataagattggtaggaat 496

                                                                       
Query: 181 gttcagagggtgtttaaatgccctattataaacgactaatatattcagtcttataaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gttcagagggtgtttaaatgccctattataaacgactaatatattcagtcttataaggag 436

                                                                       
Query: 241 gcttggtagatccaaaggaataagccgaagcacgaatgaaaaggaatttaaagtcaagga 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gcttgggagatccaaaggaataagccgaagcacgaatgaaaaggaatttaaagtcaagga 376

                                                                       
Query: 301 ggctctttagagactcccatgattaaaaggtacagttcccggccgtaacaacgtgaggca 360
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 375 ggcgctttagagactcccatgattaaaaggtacagttcccggccgtaacaacatgaggca 316

                                                                       
Query: 361 aacagcttccactcactgtgtgtgggctcctgttcgggctccttcagtatctcccactcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aacagcttccactcactgtgtgtgggctcctgttcgggctccttcagtatctcccactcc 256

                                                                  
Query: 421 actagaggatctactgagcaagaggcaccatgttctagagtgaagctcttagcgc 475
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 255 actagaggatctactgagcaagaggcaccatgttccagagtgaagctcttagcgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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