BAC Information

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BAC

Clone NameMSMg01-440N21
Chromosome2 (Build37)
Map Location 69,115,214 - 69,262,665
singlet/doubletdoublet
Overlap geneAbcb11, Dhrs9, Lrp2
Upstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2
Downstream geneBbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440N21.T7 (MSMg01no440_n21.b1)MSMg01-440N21.TJ (MSMg01no440_n21.g1)
ACCAG530882AG530883
length782784
length of high quality
(start - end)		478 (52 - 529)417 (82 - 498)
definitionCHROMAT_FILE: MSMg01no440_n21.b1 PHD_FILE: MSMg01no440_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:27 2005CHROMAT_FILE: MSMg01no440_n21.g1 PHD_FILE: MSMg01no440_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,115,214 - 69,115,687)(69,262,249 - 69,262,665)
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATGAAGGAGTTTCAATGAACGCCATGTAGGGGATCAAA
AATGAGCACATCCAGGCTGGAAAATACTTGTGGCTTGATACATGTTCCCT
TATAAGAAAGATAATGTCCCAAACAGCAGGATAGTGTACTTTTGCAATTT
AAAACTTATGGCAATTTGTATAATAAGGTCTAGTCTTATCAAATAACTTC
ACCAACTAAGAAAATTTTAAAGTGTGAGAAAAAAAAAAGATTTCCAGTAT
TGTTTAAAATTTTTAAAAGAAAAAAAACTTTAAAAAGTTATCTCCATACA
AACAAATAATTTGTTATGCATGTTTAAGAAGCATATTTCCTATGCTTATT
ATAATTATTCACCTAAAATTGGTAGGTATCCCTTAATAATCCAGTTTAAT
GTAATTTATTTTCTTCAAGGTAATTAAAAGAATCTGTGTTCTTTTGGGGG
GAGGGGTGTAAACTATAAAGTTTTCACCAAGTCCTAAAGCTCTCCTATTT
GGTCTGACTTAGTAATCCCTTACTATACATCTGAAAAGCATGTTTGCCTA
AAGATAAATGAGACCCCCTGGAAAATTTCTCCCATGCCCCTGACCCCCCC
AAAAAAAAGGGGTGCCCGACCTTTCTGTCTTCTTAGAAGAATTTGTGGAC
CCCATTACCCCGGGAAGTTCTTTGGGCCAATGAAAACACTTAAATTTTAA
ATGTTTCCGGAGGGAAACCCCTGGAACCAAAA

NNNNNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATCACAGGAACCATGG
CACGAGCGTACATTTTCTATAGCAAGTAGCATTCCCGGTTTCTCTGTGCT
AATATTGCATGTGTGTTAAGGAATGAATGGAAGGGTGGGAGAGTGGATGA
ATGAAATATACTACTGATTATTTTATTCTCAAGTCCTCGAAATATTTTGT
TGCTCATATTTTGAGTACCGATTGTAATTACTTTGATTAGAAAAGAAAAA
GCTACTGGAAATGATGCTGCTGGAAATTTCTAATAAATGTGTATTTTATC
AGATGGCTTTTGGGTCTCTGACTCCTTCTTGAGCCTTGGTCACAAGTTGC
TTGAAACGGTGCTTAGTTGGTGACTTAGTTAGGGTTTTACTGCTGTGAAC
AGACATCATGACCAAGGCAACTCTTATAAGAACAACATTTAATTGGGGCT
GGCTTACAGGTTCAGAGGTTTAGTCCATTATCATCGAGGCAGGAACATGG
CAGCATCCACGCAGGCATGGTGCCAGAAGAACTAAGAGTTCTACATTTTC
CTCTTGAAGCTGGTATTCAAAAACTGACTTTCCACGCGCTTAGAACAAGG
TTTCCAAACCCCTGTTCCCTGGTAACCCCCTATCCCATAAGGGTTTTACT
CCCCAAATAGGCCATTCTCTGGCCCAAAATTTTATATTATCCCATTTTTT
TTTTTTGTATAAACAATCTTTGAAGGTGGGTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_n21.b1 MSMg01no440_n21.b1 CHROMAT_FILE:
MSMg01no440_n21.b1 PHD_FILE: MSMg01no440_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:27 2005
         (478 letters)



>mm_chr2_69115010_69115887
          Length = 878

 Score =  870 bits (450), Expect = 0.0
 Identities = 468/474 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgaaggagtttcaatgaacgccatgtaggggatcaaaaatgagcacatccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgaaggagtttcaatgaacgccatgtaggggatcaaaaatgagcacatccag 264

                                                                       
Query: 65  gctggaaaatacttgtggcttgatacatgttcccttataagaaagataatgtcccaaaca 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctgggaaatacttgtggcttgatacatgttcccttataagaaagataatgtcccaaaca 324

                                                                       
Query: 125 gcaggatagtgtacttttgcaatttaaaacttatggcaatttgtataataaggtctagtc 184
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 gcaggatagtgtacctttgcaatttaaaacgtatggcaatttgtataataaggtctagtc 384

                                                                       
Query: 185 ttatcaaataacttcaccaactaagaaaattttaaagtgtgagaaaaaaaaaagatttcc 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 ttatcaaataacttcaccaactaagaaaattttaaagtgggagaaaaaaaaaagatttcc 444

                                                                       
Query: 245 agtattgtttaaaatttttaaaagaaaaaaaactttaaaaagttatctccatacaaacaa 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtattgtttaaaattttaaaaagaaaaaaaactttaaaaagttatctccatacaaacaa 504

                                                                       
Query: 305 ataatttgttatgcatgtttaagaagcatatttcctatgcttattataattattcaccta 364
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataatttgctatgcatgtttaagaagcatatttcctatgcttattataattattcaccta 564

                                                                       
Query: 365 aaattggtaggtatcccttaataatccagtttaatgtaatttattttcttcaaggtaatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaattggtaggtatcccttaataatccagtttaatgtaatttattttcttcaaggtaatt 624

                                                                 
Query: 425 aaaagaatctgtgttcttttggggggaggggtgtaaactataaagttttcacca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaagaatctgtgttcttttggggggaggggtgtaaactataaagttttcacca 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no440_n21.g1 MSMg01no440_n21.g1 CHROMAT_FILE:
MSMg01no440_n21.g1 PHD_FILE: MSMg01no440_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:28 2005
         (417 letters)



>mm_chr2_69262127_69262943
          Length = 817

 Score =  783 bits (405), Expect = 0.0
 Identities = 414/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatcacaggaaccatggcacgagcgtacattttctatagcaagtagcattcccggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tctatcacaggaaccatggcacgagcgtacattttctatagcaagtagcattcccggttt 480

                                                                       
Query: 61  ctctgtgctaatattgcatgtgtgttaaggaatgaatggaagggtgggagagtggatgaa 120
           |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 479 ctctgtgctaatattgcacgtgtgttaacgaatgaatggaagggtgggagagtggatgaa 420

                                                                       
Query: 121 tgaaatatactactgattattttattctcaagtcctcgaaatattttgttgctcatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgaaatatactactgattattttattctcaagtcctcgaaatattttgttgctcatattt 360

                                                                       
Query: 181 tgagtaccgattgtaattactttgattagaaaagaaaaagctactggaaatgatgctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgagtaccgattgtaattactttgattagaaaagaaaaagctactggaaatgatgctgct 300

                                                                       
Query: 241 ggaaatttctaataaatgtgtattttatcagatggcttttgggtctctgactccttcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggaaatttctaataaatgtgtattttatcagatggcttttgggtctctgactccttcttg 240

                                                                       
Query: 301 agccttggtcacaagttgcttgaaacggtgcttagttggtgacttagttagggttttact 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 239 agccttggtcacaagttgcttgaaacggtgcttggttggtgacttagttagggttttact 180

                                                                    
Query: 361 gctgtgaacagacatcatgaccaaggcaactcttataagaacaacatttaattgggg 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gctgtgaacagacatcatgaccaaggcaactcttataagaacaacatttaattgggg 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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