BAC Information

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BAC

Clone NameMSMg01-441B10
Chromosome2 (Build37)
Map Location 59,486,097 - 59,486,576
singlet/doubletsinglet
Overlap geneTanc1
Upstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016
Downstream geneWdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441B10.T7 (MSMg01no441_b10.b1)MSMg01-441B10.TJ (MSMg01no441_b10.g1)
ACCAG531052AG531053
length740771
length of high quality
(start - end)
480 (70 - 549)240 (80 - 319)
definitionCHROMAT_FILE: MSMg01no441_b10.b1 PHD_FILE: MSMg01no441_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:44 2005CHROMAT_FILE: MSMg01no441_b10.g1 PHD_FILE: MSMg01no441_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCTTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGAGAGGATCCG
CGGAATTCAACTGTTCCGCAACTCAATCCCTTCTTTCCAGGCTGCCCTTG
CAGGACCTGCCGCGAGCCATCTTCTTAGGTATTCAAAATGATTATATGAT
TACAGACTTTGTTTGCTACTGCTACGGCCACCTTCACTTCACAGAAAGCA
CCCCTCAGACAGCCCCACCCCCAACCCAGCACAGCACAGAATTTTAAAAA
ACCTCCAACCAGGAGGATAAATGACTCCTGCTGGGTCCAAAGAATACGCA
TGAAGGAATATGAGAAGAGTATCTTCCCAGGGAGTACATCCCTCATAAAC
TGACTAGGTGTCACCATAAACACCTTACTAAATCCAAGTACCTGAGACAA
GCTTGTACCTATACCGGGGGACCACAAATAGCACGGACGGCCACTGAAGT
CACTGTAGGTTACAACCCTCGAAAGTGTTCACAGGGAGTCGGTAACTCTT
CAGTTCCTATGAGACCCATCTCGTACACTTCTGCCAAAAGGAAAGAAACC
CTAGGGCACGAGGTCTCCCTTTGTCACCGTCTGCAAGCTGGGAAGGGTGG
CTGCGATGTGCCCTCACACCGAGGCTCTGTTATTTGGCGCACAGAAACCT
TCAGGCCTCTTCCGTCCTCCATCCATGCATCTCCCCCCAGTATCCGGTTC
TTTGCTGCCCACTCACCGCTTCCTTAGCTGTTCTCTGGGA
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGGCACCTCCAGTGACAT
GCCTGCATGATGCCCTGCTTGCCACCATGATGATAATGGACTGAACTCTG
AAACTGTAAGCCAGCCCCAATTAAATATTTGCCTTTATAAGAGTTGCTTT
GGTCATGGTGCCTCTTCACAGCAATGGAACCCTAACTAAGACACAATTAT
AGAGATCATATTCTAGCAAATGCATATATATTCTCTATGGCATTTAGATT
CTGCTAAGGTTATTAAGATATTTATATAATTGATATTATTATTTATTAGA
CTGCTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT
ATTTATTTATGACAGGNCCTCACTATGTAGTTCTGGCTCACCTGGAACTC
ACAGAGATCCACCTGCCTCTGCCCTTCTTGTTTTTGNTTTGCTTTTTTTA
TATCTATTTAATTTTTTTTATTCATACGATTATACTGATACTCCATTCAC
ACATCTTTCCACAGTGCCTCACACTCCCCGTCGCGGTGGACTCGAAGTTA
TTCGTTGTTATTTTTTTTTATTATTTCTTGCCTCATCATCTTCCTCCGCT
CTTTCCCCCCTTTCCTCTTTTTTTTTTTTCCCGGCGGCCTCCCTCCTCTC
TTGTCCCCCCCCTCTTTTCTTTTCCGCGCCTCTTTATTTTCGTCTTTTTA
CTTTCTTAACACATCCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_b10.b1 MSMg01no441_b10.b1 CHROMAT_FILE:
MSMg01no441_b10.b1 PHD_FILE: MSMg01no441_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:44 2005
         (480 letters)



>mm_chr2_59485897_59486776
          Length = 880

 Score =  851 bits (440), Expect = 0.0
 Identities = 470/480 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactcaatcccttctttccaggctgcccttgcaggacctgccgcgagccatcttcttagg 60
           ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 680 aactcaatcccttctttccaggctgccctggcaggacctgccgccagccatcttcttagg 621

                                                                       
Query: 61  tattcaaaatgattatatgattacagactttgtttgctactgctacggccaccttcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tattcaaaatgattatatgattacagactttgtttgctactgctacggccaccttcactt 561

                                                                       
Query: 121 cacagaaagcacccctcagacagccccacccccaacccagcacagcacagaattttaaaa 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 cacagaaagcacccctcagacagccccacccccgacccagcacagcacagaattttaaaa 501

                                                                       
Query: 181 aacctccaaccaggaggataaatgactcctgctgggtccaaagaatacgcatgaaggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aacctccaaccaggaggataaatgactcctgctgggtccaaagaatacgcatgaaggaat 441

                                                                       
Query: 241 atgagaagagtatcttcccagggagtacatccctcataaactgactaggtgtcaccataa 300
           |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgagaagagcaactccccagggagtacatccctcataaactgactaggtgtcaccataa 381

                                                                       
Query: 301 acaccttactaaatccaagtacctgagacaagcttgtacctataccgggggaccacaaat 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 acaccttactaaatccaagtacctgagacaagcttgcacctataccgggggaccacaaat 321

                                                                       
Query: 361 agcacggacggccactgaagtcactgtaggttacaaccctcgaaagtgttcacagggagt 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 320 agcacggaccgccactgaagtcactgtaggttacaaccctcgaaagtgttcacagggagc 261

                                                                       
Query: 421 cggtaactcttcagttcctatgagacccatctcgtacacttctgccaaaaggaaagaaac 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 260 cggtaactcttcagttcctatgagacccatctcgtacacttctaccaaaaggaaagaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)