BAC Information

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BAC

Clone NameMSMg01-441C17
Chromosome2 (Build37)
Map Location 112,723,541 - 112,723,940
singlet/doubletsinglet
Overlap geneRyr3
Upstream geneOlfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441C17.T7 (MSMg01no441_c17.b1)MSMg01-441C17.TJ (MSMg01no441_c17.g1)
ACCAG531114AG531115
length773798
length of high quality
(start - end)
388 (66 - 453)362 (74 - 435)
definitionCHROMAT_FILE: MSMg01no441_c17.b1 PHD_FILE: MSMg01no441_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:51 2005CHROMAT_FILE: MSMg01no441_c17.g1 PHD_FILE: MSMg01no441_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGAGGCTCACAACCCACGAAAAGATGTTGTTGTAGTAGTAGCACAAG
CATCTTTAATCCCAGCATGCCTCAACTGACAGAATGTAAAGATAGGGGAA
TCCACAGATGCTCACAGACTAATTCACACAGCAACAAAGAACAAGACAGA
ACCTGTCTCTAACAAGGTGAAAGGTGAGGACCTATACACACCTGACGTTG
TCCTCTGACCTTTGTACATTTATTGTGTCAGGCATGCTTTCACATTCACA
CACACATGAGCATGCATGTCTCACACACACACACACACACACACACACAC
ACACACACACACACACACACACAATCACTCTCATGTATTTTGCAAAAGCA
TATGCACTTTTCATTAAGTGAGAACTACCCATAACAATCAATTAGCTTGC
AGCAGATTGGAGGAGACCCTCTCTGAAGATTTGCATTTACACATGGAGCA
TCTATATCATGACCCCTCCTCCAAATGCTCATGGCTCATGGTGTATGGCG
CTCGTGTAAAGATTATAAGAGTTGTAGGGAATGGTGACTATTGTGAGACC
GTGCTGCTTGCATAAGATGGATTTACTGCATCACACCGTCTGTTGACTGA
ATCTATTGACACCCGAACCAATGGCAAGGGTGTGTGGCCCATTCCCCATT
TCTTTTTTTAATCACTCCCCGCCCGATTGTTATATTAGTAAAATGCCTGT
TCTCTTTTTCCCTTCTTCTCTCT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAATACTTTTAACATGA
AGGAGTGTTGCATTTTGTCAAATGCTTTTCCTGCATCTAAGGAGATGATC
ATGTGATTTTTTTCCTTTGAGTTTGTTTATATAGTGGATTATGTGAATGT
ATTTTCATATATTAAACCAACCTTGCACCCCAGGGACGAAGCCAACTTGA
TTGTGGTGAATGATGATTTTGATGTGTTCTTGGATTCTGTTTACAAGAAT
TTTATTGAGTATTTTTGCTTTTATATTCATAAGGAAGATTGGTCTGAAGT
TCTCTTTGTTTTGTTTAGGTATCAGAGTAACTGTGGCTTCATAGAATGAG
TTAGGTAGTGTTCCTTCTGTTTCTATTTTATGGAATAGCTTGAGGAAAAT
TGTCATCAGGTCTTCTTTGAAGGTCTGTTATAATTCTCGTCTAAATCCAT
TTGGACTTTTTTGTTTGGCAGTTTTCTAACAATTTGCACCTTTTCCTATG
AACTATTGCGCCTTTTTAACATAAGTTTATAATGCTTTTCATCTCTTTCT
TCTTTCCTCTTCCTCCTCTTTTCCTATATCTTCTTTTTTTTCCCCTCTGT
TTTTCCCCCCTTTCTTTATTTTTTACCCCCCCTCTCCTATTTTCTTTCCC
TTTCCTCTTTTTTTTCTTCCTTTTCTCTGTTCTTTCATACTCCTTTCCCT
ACCCTTCCCGCACTCCCGCCTTTTTCCTCCCTCTTTTTTTCTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_c17.b1 MSMg01no441_c17.b1 CHROMAT_FILE:
MSMg01no441_c17.b1 PHD_FILE: MSMg01no441_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:51 2005
         (388 letters)



>mm_chr2_112723341_112724130
          Length = 790

 Score =  654 bits (338), Expect = 0.0
 Identities = 380/400 (95%), Gaps = 12/400 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccacgaaaagatgttgttgtagtagtagcacaagcatctttaatcccagcatgcctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccacgaaaagatgttgttgtagtagtagcacaagcatctttaatcccagcatgcctcaa 260

                                                                       
Query: 61  ctgaca--gaatgtaaagataggggaatccacagatgctcacagacta---------att 109
           ||||||  ||||||||||||||||| ||||||||| ||||||||||||         |||
Sbjct: 261 ctgacatagaatgtaaagatagggggatccacagaagctcacagactagctaatctaatt 320

                                                                       
Query: 110 cacacagcaacaaagaacaagacagaacctgtctctaacaaggtgaaaggtgaggaccta 169
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 321 cacacagcaacaaagaacaagacagaacctgtctctaaaaaggtgaaaggtgaggaccga 380

                                                                       
Query: 170 tacacacctgacgttgtcctctgacctttgtacatttattgtgtcaggcatgctttcaca 229
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tacacacctgacgttgtcctctgacctttgtacattcattgtgtcaggcatgctttcaca 440

                                                                       
Query: 230 ttcacacacacatgagcatgcatgtctcacacacacacacacacacacacacacacacac 289
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ttcacacacacatgagcatgcatgtcacacacacacacacacacacacacacacacacac 500

                                                                       
Query: 290 acacacacacacacacacaa-tcactctcatgtattttgcaaaagcatatgcacttttca 348
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacacacacacacacacaaatcactctcatgtattttgcaaaagcatatgcacttttca 560

                                                   
Query: 349 ttaagtgagaactacccataacaatcaattagcttgcagc 388
           |||||||||||||||||| ||||||||||| |||||||||
Sbjct: 561 ttaagtgagaactacccagaacaatcaattcgcttgcagc 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 790
Length adjustment: 9
Effective length of query: 379
Effective length of database: 781
Effective search space:   295999
Effective search space used:   295999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)