Query= MSMg01no441_l04.b1 MSMg01no441_l04.b1 CHROMAT_FILE:
MSMg01no441_l04.b1 PHD_FILE: MSMg01no441_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:35 2005
(558 letters)
>mm_chr2_135633174_135634139
Length = 966
Score = 901 bits (466), Expect = 0.0
Identities = 534/560 (95%), Gaps = 8/560 (1%)
Strand = Plus / Minus
Query: 5 gaattccatggctgctcttacttccctatgcaccatagcagctttaataagcaagagttt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gaattccatggctgttcttacttccctatgcaccatagcagctttaataagcaagagttt 705
Query: 65 ggaataaaagcaactctaccatctaataagcgaccagatcttactcctgaagaacatttg 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ggaataaaagcaactcaaccatctaataagcgaccagatcttactcctgaagaacatttg 645
Query: 125 cattacaatatatgttaaaaatagataaagataaagaaaa-----gacaaagatgctaac 179
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 644 cattacaatatatgttaaaaatagataaagataaagaaaaaaaaagacaaagatgccaac 585
Query: 180 agccaaggcaacatagtccagttctgaaagaaatcaggatagcatagaaaagttcaataa 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 584 agccaaggcaacatagtccagttctgaaagaaatcaggatagcatagaacagttcaataa 525
Query: 240 ggaaagggagg--gacaagaggagggggggaaggagaagagacagagacattggtgaagc 297
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 524 ggaaagggaggaggacaagaggaggtggggaaggagaagagacagagacattggtgaagc 465
Query: 298 acatacattacattaggaactctacatgcaattaatatctaatgaaaataacttgaaata 357
||||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||
Sbjct: 464 acatacattacattaggaactcttcatacaattaatatttaatgaaaacaacttgaaata 405
Query: 358 attaaaaaaaaaacaatgtgccccaaacactagttttttc-aagagccatattttagtga 416
||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 404 attcaaaaagaaacaatgtaccccaaacactagttttttttaagagccatattttagtga 345
Query: 417 tttttctgaactaaaatcccacaggaaagaagtctagcaaggtttattttcattttccaa 476
|| ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttattctgaactgaaatcccataagaaagaagtctagcaaggtttattttcattttccaa 285
Query: 477 atttgaaaatcatctttggtttggttagacataaatgtttaacaacataaaaatgagggc 536
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 284 atttgaaaatcatctttggtttggttagacatgaatgtttaacaacataaaaatgagggc 225
Query: 537 aaattgcctaaaaataatta 556
||||||||||||||||||||
Sbjct: 224 aaattgcctaaaaataatta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 966
Length adjustment: 10
Effective length of query: 548
Effective length of database: 956
Effective search space: 523888
Effective search space used: 523888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_l04.g1 MSMg01no441_l04.g1 CHROMAT_FILE:
MSMg01no441_l04.g1 PHD_FILE: MSMg01no441_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:35 2005
(526 letters)
>mm_chr2_135498746_135499673
Length = 928
Score = 901 bits (466), Expect = 0.0
Identities = 513/532 (96%), Gaps = 10/532 (1%)
Strand = Plus / Plus
Query: 1 agggggaagtaattta-ttaaaaggatgattttatttagttgggctcaccgtgatctaaa 59
|||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 201 agggggaagtaatttatttaaaaggattattttatttagttgggctcactgtgatctaaa 260
Query: 60 atgctttgtacttgctttttgcattgtattttattttccaaaggacctggggatatatga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctttgtacttgctttttgcattgtattttattttccaaaggacctggggatatatga 320
Query: 120 ctgccaaatagaaatacacttaatgaaaggggaatattccactggatattatttttgaaa 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgccaaatagaaatacacttaattaaaggggaatattccactggatattatttttgaaa 380
Query: 180 gagtgtctttttct--gtgctccagagttgggggactgactgtgttacttacagtagttt 237
|||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gagtgtctttttttttgtgctccagagttgggggactgactgtgttatttacagtagttt 440
Query: 238 gagtaactctgaagaatggcttttgaactgtaacgaatgccgcccaccatacatgtggcg 297
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 gagtaactctgaagaatggcttttgaactgtaacg----ccgcccaccatacatgtggca 496
Query: 298 tggtaatgtttaagagttttcttctctgtttcaattcacatctttttatttagcaaatct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tggtaatgtttaagagttttcttctctgtttcaattcacatctttttatttagcaaatct 556
Query: 358 cttttagctttgttttgaaaaa-tgctgctgagaatgttagttattaattagatcattac 416
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 557 cttttagctttgtattgaaaaaatgctgctgagaatgttagttattaattagatcattac 616
Query: 417 tcaagtttcaatggagacaatatttagggggggtt--agtttagttattgcagctgctga 474
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 617 tcaagtttcaatggagacaatatttagggggggttttagtttagttattgcagctgctga 676
Query: 475 gaaaatatagcagcacttggaaatgaacggagtgtttccttttatttcgagc 526
|||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 677 gaaaatatagcagcacttgggaatgaacggagtgtttccttttatttagagc 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 928
Length adjustment: 10
Effective length of query: 516
Effective length of database: 918
Effective search space: 473688
Effective search space used: 473688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
