MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-441L07
Chromosome	2 (Build37)
Map Location	143,362,371 - 143,362,614
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC668913, LOC668914, Kif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream gene	Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f
Link	Open Mouse BAC browser

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Click to get alignment info.

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-441L07.T7 (MSMg01no441_l07.b1)	MSMg01-441L07.TJ (MSMg01no441_l07.g1)
ACC	AG531525	AG531526
length	1,423	753
length of high quality (start - end)	---	245 (73 - 317)
definition	CHROMAT_FILE: MSMg01no441_l07.b1 PHD_FILE: MSMg01no441_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:35 2005	CHROMAT_FILE: MSMg01no441_l07.g1 PHD_FILE: MSMg01no441_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:35 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCTCTCTCTCTATTAATTTATACCACCTACCGCGCCTATTAGTCAACGAC GACTTAATTACTTATCTCAGGATACGAGGAAAGATGGAGAACCCNGAGGG NACACCCAGATACCATACCCTCACGAAGCGCGCGGAGCGCGGCGTGCGGT GTTGGCGTTACGGCACGACGCATTGAATGTAANACACGCATAGAGAATAA TAATGAATGTAGGCTATTTACTGCGCACCGAGCGCGCAATCACATCTCTA TTCCTAGACTATGTTATTACGGTACTGACATATAATATAGACATATGAGA TTTTGCGGCTGGTTTCGGTGTCCGCGCCGCCAGTCTCCCGCCGTTTTTTA TTATTCTTATCTTCTTCCCGCCGTTATACACACGCTCCTTATGGAACCAC AACAACCACAACAAAACCAACACTACCATAGATGTATAGAATAATTGTGA GAAGATAATGAGAAGAAAATCGTTGAGGCCGCGCTGAAAAAAATAACAGC AAATATAAATAGAGAGGAAAACAAATTATATCAAACATATTTAATCACGT GGAGAACCAAACACACATAGATAATATAAGAAGACGAATTATATTATCTA AACAAACAATTTATAATATGAAAGCATTAAACTAGCACACGCGGAGCCGC AGAAAGAGGGGAGGAATGATAAGAGAGACGAAGTACCATGACACTACTAC CGCACCACAAGACAGGTAGAATAACACAAGCGCGGCTGAAATATACCGCG ACTAGAAAGACCTAGGCCGAACTGTGAGAGAATTTAANATGAGGAGTGCA AACAGCATATATTATGACGCCGCGACCTAATTAAGATTTATAAAAGTATA CATGTGGAGGCAGAAGGCGGTGGGCTAGATACGCGATTCGACGATGTAAG CGCGCAGTACGATACGCGACATATCAATATTTATGACTGGCAGGTTCACA AAGAGACAGTCCTGAAGTGCTAGGATAAATGATGACAGAGATGATATGCC TTATAAATATATATCACATGATCCGAACCTCTCGGCGCCACGTTCATCTA TCATACCCCTTCTCCCCGACCACGCCTCCTACCACACCACGGTTATTAAT GGAGCGAGCGGGAGGCACACGAGCAACTCTAGCTCAGTGCGCTGCCCGAC TACATATAACACCAAGNAGTACGAGCAGAANGCTAAATGATAGATGTGCT GTGAAGGCGATAGTTTATAGCGAACGCAACGCACAGGCGTATACACTAAT GAGGGCGAGTGAGTGGGAGGAGAGATCAGAACGTGTAGATGTATANTAAC GTACTATCGGTTAATATATAGTAAANTATCGTGACACGAATTATGCTCNG ATATCAGTAGATGCACGACTTCCATCTACATTATTCTNATTCATCTCTGC TNCGTATCCCANCACACTTTTAT	TTTCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXTTTCCAGAAGAATTCCCCTGCTCTACAGAGGAAGCATAGC TCAGACAGTGGGTCGTCAGCACCACGGACAGAGCTCACCACACAGAGCAT ACTCTCCAGGGGATGCTTAACTGGCCTTCTTAAACCTACCTCTTCCATGA CTTGTAGTGGTTGTGTTTCCGGTTTGTTTGTTTGCTTGCTTGCTTGCTTG TTTGCTTGTTTGTTTCATTTGGATTTTTGTTTGTTTTTGTTTTTCTGGTA ATCCCTTCTGATTTTTTTTATTTGACTTCTACTTGTTCGGTTCTGGAGAT GTCCTAATAATTCCAACTGTCTCATTTCCCCATGCCTCTTAATAGCGTTG TGTGAATATGCCCCATATATTTTCTTCCATGTTGTGTCATTTTTCTCTTT TTGTTTATGTTGACCACTCTATATGTCCAGCCAATCTCCATAAAGGCTGG AAAGCTGCAACCTATGTTCAAAATAATATTTGTGCTTCACCCCTACCAGA TTTAACGTATAAGCATTACACCCACTTTTCATGTATCATATGTTTTTGCA TTTTAAAGGATATTCTCTATCCCACGCGCCCATTTTACACAATACCAAAT GTATAGCTACACCTTCTTGTTTCTTGTTCCCCCCCGCCCTAGAATTCCTA ACAAACAATGGGTTTATCCTTCTTTAAACCCCCTTTTCTCTCGCCCCCTT ATG
quality values	Open. Hide. 8 8 10 8 8 8 8 8 9 11 8 8 8 6 7 7 9 15 15 15 6 6 8 8 9 9 9 8 6 6 6 6 6 8 6 8 8 8 8 8 8 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 6 6 9 11 6 6 6 6 6 6 6 6 8 8 6 6 6 6 6 6 8 6 8 8 8 9 8 8 8 8 8 3 0 3 10 10 10 3 0 3 6 6 6 8 6 6 7 6 6 8 8 8 8 8 8 8 8 8 9 10 10 11 6 10 7 6 8 6 8 11 15 15 10 8 8 6 6 6 6 11 7 9 8 8 8 10 6 6 8 6 8 8 8 8 8 10 8 10 8 10 10 10 10 11 13 8 8 8 8 8 6 8 8 8 8 8 8 8 8 3 0 3 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 6 6 8 8 10 10 10 10 6 6 6 6 6 6 6 8 10 10 8 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 6 8 8 8 8 6 6 8 6 6 6 6 7 8 10 12 10 8 8 8 8 8 8 8 8 9 9 11 10 10 9 9 8 8 6 6 7 7 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 6 6 6 6 6 6 11 10 10 10 8 8 8 8 8 8 12 9 8 8 8 10 8 8 8 8 8 8 8 6 7 7 9 10 8 8 8 11 8 9 9 9 7 7 7 8 9 9 8 6 6 6 6 8 8 9 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 8 10 8 8 8 8 9 9 11 10 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 6 6 6 8 8 8 8 10 10 10 8 8 8 8 6 6 8 8 8 8 8 8 8 9 8 7 7 6 8 8 8 8 8 10 8 16 19 10 11 10 9 9 9 10 10 10 9 9 12 10 11 27 15 15 16 9 9 8 8 8 10 8 8 8 8 8 8 8 6 6 6 6 6 6 8 8 6 6 7 7 10 10 11 10 12 10 14 13 6 8 6 6 8 8 9 9 10 11 13 10 13 6 6 6 7 7 12 8 8 8 8 8 10 8 8 8 8 10 8 12 10 7 6 6 6 8 8 8 8 8 8 8 9 9 9 9 10 8 6 6 6 8 8 10 8 8 8 8 6 6 6 6 10 8 8 6 8 6 6 7 8 8 8 8 8 8 10 10 10 9 9 10 10 10 8 9 8 8 8 8 8 8 11 8 10 11 11 8 8 8 6 6 8 7 10 13 19 18 13 12 10 10 8 9 8 9 8 8 8 8 9 10 10 10 13 13 10 8 8 10 10 11 9 9 9 9 9 11 11 17 13 11 10 8 10 8 6 6 6 6 8 6 8 6 6 8 6 8 8 8 10 8 7 6 6 6 8 8 10 8 8 8 8 8 8 8 8 11 8 8 8 9 9 9 9 9 9 9 9 9 10 9 9 10 10 9 8 8 8 8 8 6 6 8 8 9 8 8 8 8 8 8 8 10 8 8 8 8 8 8 9 6 6 6 6 6 8 6 6 6 6 8 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 11 11 10 9 9 9 10 10 10 8 8 8 8 6 6 6 6 3 0 3 8 8 10 13 17 12 10 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 6 8 8 8 6 8 8 8 8 8 8 8 8 8 8 8 8 8 10 6 6 8 6 6 8 6 8 9 8 8 12 10 8 8 10 8 8 8 9 10 9 9 10 12 14 13 15 8 10 10 8 8 7 6 7 7 8 6 7 8 8 8 8 8 8 8 8 8 8 8 8 11 9 11 11 11 10 10 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 6 6 8 8 8 9 8 8 11 13 10 10 10 12 9 9 9 9 9 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 11 8 8 6 6 6 7 8 8 8 8 8 8 10 12 9 11 11 12 9 11 11 11 8 6 6 6 10 10 10 8 8 9 9 10 12 9 10 10 8 10 6 6 8 8 8 8 8 8 8 10 8 9 10 9 9 10 11 11 11 19 15 8 8 8 8 10 10 13 11 11 8 8 8 10 8 8 8 8 8 10 8 8 8 6 6 8 8 8 10 8 8 8 6 6 6 10 12 10 8 8 8 10 10 10 17 10 10 8 9 8 8 7 7 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 11 15 13 13 8 6 6 6 6 8 8 8 6 6 8 8 8 8 8 6 8 8 7 7 9 9 6 10 10 10 10 8 8 6 7 6 8 6 6 8 8 11 11 14 8 8 8 8 6 6 6 6 10 8 8 6 6 8 8 8 8 8 8 8 11 8 8 8 8 8 8 7 7 7 7 9 9 10 12 12 8 6 6 6 6 8 6 8 8 10 3 0 3 8 8 8 7 9 9 9 10 9 8 8 3 0 3 6 6 6 6 6 6 8 8 8 6 6 8 8 8 6 6 6 6 6 6 7 6 8 8 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 10 6 8 6 7 8 8 8 8 8 8 8 8 8 9 8 8 7 7 6 6 6 6 6 6 8 6 6 6 6 8 8 8 8 8 8 8 8 6 8 6 6 7 6 8 6 8 6 7 7 7 6 6 6 6 6 6 6 6 6 6 8 6 6 8 8 9 9 9 10 11 3 0 3 6 8 8 9 11 9 10 10 10 9 8 8 6 6 6 6 8 8 12 10 11 10 6 6 6 6 8 3 0 3 8 6 8 8 8 8 8 9 8 8 6 6 8 6 8 8 8 8 8 8 3 0 3 9 9 9 9 10 10 12 11 8 8 6 6 6 8 6 6 6 6 8 6 6 8 6 6 8 6 9 7 8 8 6 7 7 7 6 6 3 0 3 6 6 7 8 8 8 8 9 9 10 10 3 0 3 6 6 8 8 8 8 8 3 0 3 10 9 10 10 10 7 6 7 6 6	Open. Hide. 8 11 6 6 8 8 8 8 8 8 6 6 6 8 7 8 8 8 8 10 21 16 28 30 28 28 28 32 44 23 25 20 19 9 7 8 6 6 6 8 8 8 14 13 14 11 11 21 25 21 11 11 11 26 21 21 21 8 7 7 6 7 6 6 6 6 6 7 9 7 8 9 11 15 16 37 47 47 59 59 59 59 53 53 53 53 53 53 53 53 53 53 53 57 57 50 53 50 57 42 42 42 25 25 25 31 31 42 42 68 54 44 44 24 24 16 12 12 15 22 29 37 37 37 40 40 50 50 50 50 68 68 57 57 57 57 47 47 47 47 57 57 57 54 54 57 57 57 68 57 57 68 57 57 57 57 50 50 57 50 27 27 15 21 21 46 43 57 57 57 54 57 57 52 52 57 57 57 68 68 68 68 57 57 57 57 57 57 57 57 59 59 68 57 57 57 57 57 57 57 68 68 68 68 68 59 59 57 57 57 57 57 52 52 54 59 59 57 57 57 59 59 59 57 57 44 47 57 57 57 57 57 57 59 59 57 59 59 59 59 68 68 68 68 68 68 59 59 43 43 42 44 42 33 30 26 26 26 26 30 44 47 59 57 57 43 43 47 39 41 44 44 54 57 57 57 59 47 43 37 33 32 30 30 39 42 59 59 48 48 48 59 59 59 57 57 59 59 48 48 39 39 40 43 43 48 48 48 46 47 46 46 41 27 27 12 10 9 8 8 8 11 8 9 11 19 24 30 41 41 39 43 33 33 30 39 39 47 47 43 43 37 37 40 39 47 39 43 39 42 32 39 34 34 23 11 11 11 11 17 21 24 23 20 32 32 43 47 43 39 39 37 37 43 46 57 57 57 44 39 35 35 39 39 47 48 48 57 57 57 44 43 43 42 42 35 37 28 32 20 20 20 31 32 39 42 42 26 25 11 11 12 21 12 15 15 28 32 39 43 43 46 54 54 54 48 48 46 29 29 22 25 20 31 28 30 30 33 39 47 57 43 47 43 35 35 35 35 35 39 47 48 48 48 43 43 37 37 28 30 31 23 17 10 9 9 13 15 37 37 37 35 30 28 33 33 37 39 31 26 16 16 16 16 24 32 30 34 22 22 18 18 15 18 18 20 22 23 22 28 15 15 14 14 12 18 12 11 11 18 18 18 19 20 18 23 19 19 15 14 17 21 24 22 17 17 14 14 24 28 28 28 24 22 18 12 9 10 9 9 8 8 10 10 10 15 10 10 11 11 12 15 13 19 12 12 13 12 12 12 11 9 9 10 10 11 14 20 20 20 15 17 11 11 11 12 10 8 8 8 8 8 10 10 10 9 9 9 12 13 10 10 9 9 10 11 8 10 10 11 11 13 16 10 8 8 8 8 8 10 11 15 24 20 24 15 12 8 8 8 10 8 8 8 8 8 10 11 10 9 9 9 9 8 8 8 6 6 8 10 8 8 8 8 10 10 9 9 11 12 12 9 9 9 11 9 9 11 11 8 8 8 8 8 10 11 7 6 6 6 8 8 8 8 6 6 8 8 15 12 17 10 10 6 6 6 6 6 7 6 6 8 8 8 10 9 9 9 9 9 8 8 8 8 10 8 8 8 8 8 8 10 10 13 10 10 8 8 6 6 8 8 9 9 9 10 12 12 15 18 9 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 20 10 10 8 8 7 7

Alignment Information

BAC End 1	BAC End 2
	Query= MSMg01no441_l07.g1 MSMg01no441_l07.g1 CHROMAT_FILE: MSMg01no441_l07.g1 PHD_FILE: MSMg01no441_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:35 2005 (245 letters) >mm_chr2_143362171_143362815 Length = 645 Score = 456 bits (236), Expect = e-133 Identities = 242/244 (99%) Strand = Plus / Plus Query: 1 ttcccctgctctacagaggaagcatagctcagacagtgggtcgtcagcaccacggacaga 60 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 201 ttcccctgctctacagaggaagcaaagctcagacagtggatcgtcagcaccacggacaga 260 Query: 61 gctcaccacacagagcatactctccaggggatgcttaactggccttcttaaacctacctc 120 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 261 gctcaccacacagagcatactctccaggggatgcttaactggccttcttaaacctacctc 320 Query: 121 ttccatgacttgtagtggttgtgtttccggtttgtttgtttgcttgcttgcttgcttgtt 180 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 321 ttccatgacttgtagtggttgtgtttccggtttgtttgtttgcttgcttgcttgcttgtt 380 Query: 181 tgcttgtttgtttcatttggatttttgtttgtttttgtttttctggtaatcccttctgat 240 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 381 tgcttgtttgtttcatttggatttttgtttgtttttgtttttctggtaatcccttctgat 440 Query: 241 tttt 244 \|\|\|\| Sbjct: 441 tttt 444 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 13 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 245 Length of database: 645 Length adjustment: 9 Effective length of query: 236 Effective length of database: 636 Effective search space: 150096 Effective search space used: 150096 X1: 7 (13.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 7 (14.4 bits) S2: 7 (14.3 bits)

BAC End 1

BAC End 2

Query= MSMg01no441_l07.g1 MSMg01no441_l07.g1 CHROMAT_FILE:
MSMg01no441_l07.g1 PHD_FILE: MSMg01no441_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:35 2005
         (245 letters)



>mm_chr2_143362171_143362815
          Length = 645

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccctgctctacagaggaagcatagctcagacagtgggtcgtcagcaccacggacaga 60
           |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 201 ttcccctgctctacagaggaagcaaagctcagacagtggatcgtcagcaccacggacaga 260

                                                                       
Query: 61  gctcaccacacagagcatactctccaggggatgcttaactggccttcttaaacctacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcaccacacagagcatactctccaggggatgcttaactggccttcttaaacctacctc 320

                                                                       
Query: 121 ttccatgacttgtagtggttgtgtttccggtttgtttgtttgcttgcttgcttgcttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccatgacttgtagtggttgtgtttccggtttgtttgtttgcttgcttgcttgcttgtt 380

                                                                       
Query: 181 tgcttgtttgtttcatttggatttttgtttgtttttgtttttctggtaatcccttctgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttgtttgtttcatttggatttttgtttgtttttgtttttctggtaatcccttctgat 440

               
Query: 241 tttt 244
           ||||
Sbjct: 441 tttt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

no map image available.

BAC End Information

Alignment Information