BAC Information

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BAC

Clone NameMSMg01-441N12
Chromosome2 (Build37)
Map Location 66,199,975 - 66,200,390
singlet/doubletsinglet
Overlap geneScn1a
Upstream gene9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik, Galnt3, LOC620893, Ttc21b
Downstream geneLOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540, Gm1322
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441N12.T7 (MSMg01no441_n12.b1)MSMg01-441N12.TJ (MSMg01no441_n12.g1)
ACCAG531631AG531632
length778596
length of high quality
(start - end)
419 (48 - 466)---
definitionCHROMAT_FILE: MSMg01no441_n12.b1 PHD_FILE: MSMg01no441_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:47 2005CHROMAT_FILE: MSMg01no441_n12.g1 PHD_FILE: MSMg01no441_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTGTCTACATCAGGCTGGCCTTGAATTCACAGTGGCCTTCCT
TTGCCTCCTGAGTGCTGAGATTAAAGGTGTGCACCATCATACCCATCCTC
AAAAGCTATTTTGACAGAATAAAGTGCTGATATGTTCTCAGATCAAGAGC
CTAAAAACCATTAGGAAATTCTTTATATACTATCAATTTTGAGAGATATA
CATTTGTATAAGCTCTGTTTTTATTTGTGGAGGTATATATGTATTTTTTC
TGTGTTATTTCTATTATGTATTCTTTACTTGCTTGAGGTTTCAGTTTAAT
GATAAATGCCCTCTTCTCTCTTGAAAGTGTCTTAAATGTATCTCAAATAT
GATGCCAAATATTCTGGTGTAGGGGAGAGAATGATATGGATGAGCAGTGA
GAGTCTTTAGGTTGGGAAGGAGATTGNAGGGNNNTTATTTTGTTTATCTA
TTTTATTTTGGTATTAGCTCCCCAATTTCTTAATCTGAAATACCTCCCCC
TTCCTATCTCTCTCTAGCTTACTACTAATCCATTATGTTAACACCTCTTC
CCCTTAACATTACCGTTTTTCTTTTGTACCCCGCTTTTACTCTTTCCCCC
CCCTCTTTTTCTTTTTTCTCCCCTTTCCCTCTGCCCTTTTTTCTTTCTCC
CCCTCCTTTTCCCCCTCCTCCCCCATTTGCCTCCTTATTCGTCCCACACA
CCCCACCTTTTTTCTCCTCCTCTCTCCG
NTCCTCTTTCTTTTCCTTTTTTGTCCTTTTCCTCATATGATGTTTCTTTT
TTTTTCTTCCCTTTATTTTTTTTGTTTGGTTTTTCTGTTGTTTCTNNTTT
TTTTTTGNNNNNNNNGGCAAAAGGAATANTGGGNTAAGGCCTTGGGCGGG
NCCGGNCCTGTTTCGTCAACATTTAGGTGAACACTTATAAGAAATTTATC
CGCGGAATTCTCCACNTTTAAGGTGGTCATGCCCAGGTCCCTCCAAAACA
ATTCCAGAAAATTTTGGAAACATTTTCAACTTAGTGGAAAGAACATTTTT
ATTAAAGGGTGGTTTTTTTTCCTTTCCCCCTAAGTTTTTTACCCCCTAAA
AAAAATTTTTTGAAAAAAGGTAAAGAAAATTTTTCACGGTTGGAAAACCC
TCTTTTTCCCGGGCAAAAATAAAAAGGGGGGGGGGGGAAAATTTTTAAAC
CGGGGGGGATAAAACAAGGGGGACACCACTTTTTTAAATAAAAGGGGGGC
CCTTTGGGGGGGGAAAAAATTTCCGAAAAAAAAAACCTTTTTAAAAATTT
GTGGGGGANCTCTGGGGAGAAAAAAAAAATGAAAAAAAATTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_n12.b1 MSMg01no441_n12.b1 CHROMAT_FILE:
MSMg01no441_n12.b1 PHD_FILE: MSMg01no441_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:47 2005
         (419 letters)



>mm_chr2_66199772_66200591
          Length = 820

 Score =  750 bits (388), Expect = 0.0
 Identities = 409/416 (98%), Gaps = 1/416 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattgtctacatcaggctggccttgaattcacagtggccttcctttgcctcctg 63
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattgtccagatcaggctggccttgaattcacagtggccttcctttgcctcctg 263

                                                                       
Query: 64  agtgctgagattaaaggtgtgcaccatcatacccatcctcaaaagctattttgacagaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgctgagattaaaggtgtgcaccatcatacccatcctcaaaagctattttgacagaat 323

                                                                       
Query: 124 aaagtgctgatatgttctcagatcaagagcctaaaaaccattaggaaattctttatatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaagtgctgatatgttctcagatcaagagcctaaaaaccattaggaaattctttatatac 383

                                                                       
Query: 184 tatcaa-ttttgagagatatacatttgtataagctctgtttttatttgtggaggtatata 242
           |||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 tatcaatttttgagaaatatacatttgtataagctctgtttttatttgtggatgtatata 443

                                                                       
Query: 243 tgtattttttctgtgttatttctattatgtattctttacttgcttgaggtttcagtttaa 302
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 444 tgtattttttctgtgttatttctattatgtagtctttacttgcttgaagtttcagtttaa 503

                                                                       
Query: 303 tgataaatgccctcttctctcttgaaagtgtcttaaatgtatctcaaatatgatgccaaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgataaatgccctcttctctcttgaaagtgtcttaaatgtatctcaaatatgatgccaaa 563

                                                                   
Query: 363 tattctggtgtaggggagagaatgatatggatgagcagtgagagtctttaggttgg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tattctggtgtaggggagagaatgatatggatgagcagtgagagtctttaggttgg 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 820
Length adjustment: 9
Effective length of query: 410
Effective length of database: 811
Effective search space:   332510
Effective search space used:   332510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)