BAC Information

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BAC

Clone NameMSMg01-442F17
Chromosome2 (Build37)
Map Location 170,849,490 - 170,849,883
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955
Downstream geneLOC100043743, LOC100043744
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442F17.T7 (MSMg01no442_f17.b1)MSMg01-442F17.TJ (MSMg01no442_f17.g1)
ACCAG532022AG532023
length777769
length of high quality
(start - end)
401 (70 - 470)394 (80 - 473)
definitionCHROMAT_FILE: MSMg01no442_f17.b1 PHD_FILE: MSMg01no442_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:29 2005CHROMAT_FILE: MSMg01no442_f17.g1 PHD_FILE: MSMg01no442_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTATAATTTGGGGCGGTAGAAGACTCCTTTCCGAAGAGGAGCCGCGG
AANNCCATCTCCCGAACTCAAATGGCTGAGAAGCAACTTAAGAAATGTTC
AAAGTCCTTAGTGGTTAGAGAATGCAAATCAAAATGACCCTGAGATTCCA
CCTTACACCACTCAGAATGGTTAAGATCAAAGACTCAGGTGACAATACAT
GTTAGAGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTAGGAT
TGCAAAATGGTACAACCACTCTGGAAATCAATCTGGAGGTTCCTCAGATA
GTTGGAAATAGATCTATTTAAAGACCCAGCTATACCACTCTTGGGAATAT
ACCCAAAAGATGGCCCACCATGCAACAGGGGCATGTGTTCCACTATGTTC
ATAGTGGCCTTATTTGTGATAGCCAGAAGCTGGAAACAACCTAGATGTCC
CACAACAGAAGAATGAATACAGAAAATGTGGTTCATTTACACAATGGAAT
ACTACTCAGCTATTAAGAATGAGGATATCCTGAGTTTTGCAGGCTAATGG
ATGGTACTAGAAAATATCATTCTGATTGATGGTACCTGGACAGATGACAT
AGCCATCTTTATTGCCCGACGACCTTTCACTTTTTTTTTTTTTTCCCTTC
CTCTCTTTTTTTTCTTTTCCCTTCTTCCCCTTTTCCTTTTTTTTCCCCCC
CTATTTTTTCCCCTTTTTCCTCCTTTTCTTTTTTTCCCTCCCTCCTTTTC
TTATTTTCTTCCTCCTTCGCTCTCCCT
NCCCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCATGTTCTTCCTTGACA
GGGATATCATTTAAAGTCACGGAGGAGAAAATGCAGCTAATAAGTTCCTC
ACTCCCTCTCCCTGACAGATTTTTAATATAAGTGTCACAGGATGGATATT
CAAAATCCACTCTGCTCCATCTCCAGTCAGCCCTCTCCGCACCAGCACTT
TGGAGGTGATGTCAGGGGCATCTGACAAGGAATAGATCTGTGACTTCTGA
TACTCAATTAAAACCACTTGGCAACTATTAATTGAATATTTGCCAGGCAC
TAAGGCCGATGCCAGACAATACAGGCACTACATAAATGTAGCATAGGTTA
TTTCCATCTGTTGCATGTGTGGATGGATACATATATGTCTGTACAATGAA
GGGAGGGGGAGTTGTGAGCTGAGTCCCAAACCATGTGTTGNCTTGGATAA
CTGGAGCTACTTTTCATACCCCATATTGTTTTGCACATGCCACCTTAATA
TTGCTGACTCATCCTCTCCTTTTTATCACCCTTTTCTTCTTATTTCTTCT
GCTTTGTACTATTAATTTTCTATCCTTCTCTATTTTTCCTTCTCTCCTAC
TGTTATTTTTTTTTTTTCTTCTTACTTTCTCCCGTCTGTTTCCAATCTAC
TTTTTTCCTTTTCCCTCTCCCCCCCCACTCTCTTTTTCCTTTCATTTCTT
TTCTCTCTCCTCCCTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_f17.g1 MSMg01no442_f17.g1 CHROMAT_FILE:
MSMg01no442_f17.g1 PHD_FILE: MSMg01no442_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:29 2005
         (394 letters)



>mm_chr2_170849290_170850083
          Length = 794

 Score =  708 bits (366), Expect = 0.0
 Identities = 387/394 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcatgttcttccttgacagggatatcatttaaagtcacggaggagaaaatgcagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcatgttcttccttgacagggatatcatttaaagtcacggaggagaaaatgcagcta 260

                                                                       
Query: 61  ataagttcctcactccctctccctgacagatttttaatataagtgtcacaggatggatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagttcctcactccctctccctgacagatttttaatataagtgtcacaggatggatat 320

                                                                       
Query: 121 tcaaaatccactctgctccatctccagtcagccctctccgcaccagcactttggaggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaaatccactctgctccatctccagtcagccctctccgcaccagcactttggaggtga 380

                                                                       
Query: 181 tgtcaggggcatctgacaaggaatagatctgtgacttctgatactcaattaaaaccactt 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcaggggcatctgacgaggaatagatctgtgacttctgatactcaattaaaaccactt 440

                                                                       
Query: 241 ggcaactattaattgaatatttgccaggcactaaggccgatgccagacaatacaggcact 300
           ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 441 ggcaactattaattgaacatttgccatgcactaaggccgatgccagagaatacaggcact 500

                                                                       
Query: 301 acataaatgtagcataggttatttccatctgttgcatgtgtggatggatacatatatgtc 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 acataaatgtagcataggttatttccatctgatgcatgtgtggatggatacatatatgtc 560

                                             
Query: 361 tgtacaatgaagggagggggagttgtgagctgag 394
           | ||||||||||||||||||||||||||| ||||
Sbjct: 561 tatacaatgaagggagggggagttgtgagttgag 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)