Query= MSMg01no442_i05.b1 MSMg01no442_i05.b1 CHROMAT_FILE:
MSMg01no442_i05.b1 PHD_FILE: MSMg01no442_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:42 2005
(236 letters)
>mm_chr2_4516224_4516859
Length = 636
Score = 414 bits (214), Expect = e-120
Identities = 230/238 (96%), Gaps = 6/238 (2%)
Strand = Plus / Plus
Query: 1 atcaggtctctcccatggttaccatcttttctttttctccaggtcattgaattcttggta 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 atcaggtctctcccatggttaccatcttttctttttctccaagtcattgaattcttggta 260
Query: 61 atatatgttagaattatccggagggcatgaatattgagaataccaccttagttctaagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatatgttagaattatccggagggcatgaatattgagaataccaccttagttctaagac 320
Query: 121 agaaactgatatagaggttttcaggctctttctgtgtctctgtgtctgtctgtct----c 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 agaaactgatatagaggttttcaggctctttctgtgtctctgtgtctgtctgtctgtctc 380
Query: 177 tctgtctgtgtctgtctgtctgtctctgtctctgtgtgtgtgtgtgtctgc--gtctg 232
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 381 tctgtctgtgtctgtctgtctgtctctgtctctgtgtgtgtctgtgtctgcctgtctg 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no442_i05.g1 MSMg01no442_i05.g1 CHROMAT_FILE:
MSMg01no442_i05.g1 PHD_FILE: MSMg01no442_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:42 2005
(244 letters)
>mm_chr2_4679867_4680510
Length = 644
Score = 429 bits (222), Expect = e-125
Identities = 237/242 (97%)
Strand = Plus / Minus
Query: 3 tctgtaggccaggctggcttcaaactggcctcaaacagagatccgcctgtctctgcctcc 62
||||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct: 541 tctgtagaccaggctggcttcaaactggcctcaaagagagatccacctgcctctgcctcc 482
Query: 63 caagtgctgggactaaaggtgtgtgccaccactgcccaaaagaaaaaagtcctaaacaca 122
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 481 caagtgctgggactaaaggtgtgtgctaccactgcccaaaagaaaaaagtcctaaacaca 422
Query: 123 caaaacacgtaacagattttggtttgctcataaatgttatcttttttataagaaaaatta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaaacacgtaacagattttggtttgctcataaatgttatcttttttataagaaaaatta 362
Query: 183 acatgttttctacaaataaaatctgcacccagtagatttactaccaccattttttaatgg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acatgttttctacaaataaaatctgcacccagtagatttactaccaccattttttaatgg 302
Query: 243 ta 244
||
Sbjct: 301 ta 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
