BAC Information

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BAC

Clone NameMSMg01-442N24
Chromosome2 (Build37)
Map Location 32,673,238 - 32,673,490
singlet/doubletsinglet
Overlap geneStxbp1
Upstream geneFibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik
Downstream gene9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442N24.T7 (MSMg01no442_n24.b1)MSMg01-442N24.TJ (MSMg01no442_n24.g1)
ACCAG532415AG532416
length865809
length of high quality
(start - end)
249 (75 - 323)252 (76 - 327)
definitionCHROMAT_FILE: MSMg01no442_n24.b1 PHD_FILE: MSMg01no442_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:16 2005CHROMAT_FILE: MSMg01no442_n24.g1 PHD_FILE: MSMg01no442_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTTAATTTGCGGCGCTAAACGACTCCTATATTCATAAATCCGCGGAA
TTCACACAGTGTTTCCCAGAGGACCGGCCCTTGCAAGTTGTCCTTTGACC
TCCACGAGTGTGCTATAGCACATGTGAGCCCACACATTCATGTGCCCCCA
CACACACAATGAATGTGAAAGAGAAAAAAAAATAGAAGAGAACCTGTGGA
TACAGCCCAGTTGATATAGAGCTTACTTCGCAGAAAGAAGTTTCTGGCTC
CATCCTTAGCACCAAGAAAACTGGGCATGGTGGAGTGTGCCTGTAATCCC
AGCAACCCAGCAGGCAGAAGGATCCTTATATATGTGTGAGATTAGGTCTC
AAAGGGAAAAGGGTATAGTAATATTAAGGAGAGTTTTTTCTCTTATTTTT
TTTTTTCCTTTTTCCCTTTTTCTTTTCTTTTCTTTTTTTACCTATTTTTA
TTTTTTCCTTTTTTCCTTTTCTTTTTTATTTCTCTTTTTTTTTCTTTTTC
CTTTTTTACCCCATTTTATTTTTTTTTTCTTCCTATCTTTCTATTTTTTC
CTTCTCTTATTTCTTTCTTTTCTTTACTTCACCTCTTTCTACTTGTTTAT
TCCTCTTTCTTCCACTTTCCATCCTACTCCTCCCTCTCTTCTTTTTTTTT
ACTTCTCTTTTTTCTTTCCCCCCCCTCTTTTTTTTCTACACTTTTATCTC
ACCTTTCTTCTCATTCTTATACTTCTTGCCCTTTCTTTTTTTCTCTTCGC
CCTTCTCTTTCTCTACCTTCCTTTTCTATTTTGTATCTCTTCTCCCTTTC
TATCCTCTTTTCTTTTTTCTAACCCCTTGTTTTTATTCTACGTTCTCTTT
TTCTTTTCCCCCCTN
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGGAGCCCGTGGGCTGTTTCTGT
GAGGTCTTTGGACCATAACTGTTCCAATGGGCTGGCCCAGAGTTGCCTTT
TTGATTTTGTGCTGGGTTGTGTGTGGATAAGTTTTCCGAGTGGAGCAGCC
ACAGCGACAGAGTGGTAGCCTCGCCACTCTTCTCCCTCAGGGTAACACCC
AACCCCTGCTGAGACTGCAGAAAAGGAATGGAACCCCTCCTGGCACCTCA
AGCTGTTTTTCCACCAGGAGCCTCCTGTGTTGTCTCTTGGTTCCATCATC
AAATCTGTGTGCTTTCTTCCTCACCCTTTCTCAACGGCTTCTGCTTGTGT
GCTCTCCTTTGCCTGCAAGCACCACCTATCCCTTATTGGATTGTTTCACG
TAATCTTTTGCCGCCTGCTGATTTTACTTTCTTTCTTCGTCTTTTTCCCC
TTCTCTCTTCTTTGATCCAACACTACTCTCTCCATTTTTTTCTTTCCCAC
TAATATTCTTTCCACTCTCCTCGCTCTTCTTCTCCAACCAATCACCCCCT
CTCCCCCCCCCCCTTTTCCCTTTCTCCTCTTTTCCCACTTTTTTTTTTCT
CTTTTTCTCCCTTCTCCTTTCCCACCCCCCCCCCCTTTTTTTTCTCTCTT
TCTTTCTCTCCCCCCCTCTTTCTCCCTATCATATTCTTTTACATTTTCCA
CCCACTCCCTTCCTTCTTTTTTTTTCTATTTTCCCCCCTTTTTCTACCTA
TCATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_n24.g1 MSMg01no442_n24.g1 CHROMAT_FILE:
MSMg01no442_n24.g1 PHD_FILE: MSMg01no442_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:16 2005
         (252 letters)



>mm_chr2_32673038_32673690
          Length = 653

 Score =  474 bits (245), Expect = e-138
 Identities = 251/253 (99%), Gaps = 1/253 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggagcccgtgggctgtttctgtgaggtctttggaccataactgttccaatgggctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tctggagcccgtgggctgtttctgtgaggtctttggaccataactgttccaatgggctgg 394

                                                                       
Query: 61  cccagagttgcctttttgattttgtgctgggttgtgtgtggataagttttccgagtggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cccagagttgcctttttgattttgtgctgggttgtgtgtggataagttttccgagtggag 334

                                                                       
Query: 121 cagccacagcgacagagtggtagcctcgccactcttctccctcagggtaacaccc-aacc 179
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 333 cagccacagcgacagagtggtagcctcgccactcttctccctcggggtaacaccccaacc 274

                                                                       
Query: 180 cctgctgagactgcagaaaaggaatggaacccctcctggcacctcaagctgtttttccac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cctgctgagactgcagaaaaggaatggaacccctcctggcacctcaagctgtttttccac 214

                        
Query: 240 caggagcctcctg 252
           |||||||||||||
Sbjct: 213 caggagcctcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 653
Length adjustment: 9
Effective length of query: 243
Effective length of database: 644
Effective search space:   156492
Effective search space used:   156492
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)