BAC Information

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BAC

Clone NameMSMg01-443A07
Chromosome2 (Build37)
Map Location 67,294,525 - 67,294,756
singlet/doubletsinglet
Overlap geneCmya3
Upstream geneScn9a, Scn7a, LOC383707, LOC100039540, Gm1322
Downstream geneLOC621171, LOC227995, B3galt1, Stk39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443A07.T7 (MSMg01no443_a07.b1)MSMg01-443A07.TJ (MSMg01no443_a07.g1)
ACCAG532525AG532526
length699728
length of high quality
(start - end)
237 (90 - 326)102 (128 - 229)
definitionCHROMAT_FILE: MSMg01no443_a07.b1 PHD_FILE: MSMg01no443_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:28 2005CHROMAT_FILE: MSMg01no443_a07.g1 PHD_FILE: MSMg01no443_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTTCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAC
ACCGCGGAATTCAAGAAAATTGCGAAAAATTATTGTTGNTTAATCAGCAT
ACATATAGGCATGGGNGCCTTTTATTTACCCTTAAAGGCCCTCACACGCA
CACGCATATGCACACATATGAGCTTGGGAATGGACAGGTACTCAGGAAAT
GTTGACAGGATGTAGTTGAACATGGTTTCAGTGAGTAGATGATATTATGC
TTTTGGGATGACAGGTATGCACGGGATGGTAGTTGTGACAGCTGACAACC
CATGTTGGGTGAATGGGGACTATTTTTATCTTGGCTACTTGAAGCACTGA
CAACTACTTCTGAAATTAATAGCGGGGCACTTCCGAGACTCCTGAATTGA
TCTTGGCCTTTTATTAAGAAGTACATGCCATTAAAGCATTGATCTGAGCA
TCCATCCTTTCTTGGCCTCCTAATTCTTCTTTATGGTTGCTTCTCTAATT
TTAGCTGTTTTTAATTGAAAATCTCATATGCATATTCAATGTATCTCCAT
CAAATCCAGTCCCAACCCTCTCTGCCTAACCTCCCCTGGGAAACTTCCCC
CATGCCCGAATTTGTACAGAGTTTGCCACGCCCTTCTCTTCGTAATTTAC
ACCGTCCCTGAATATTTGACGGATTTCTTGCCTCATCGTATTTCTTAAN
CTTTTTCGAAGAAGTGGGAGCCTGGNGGNCGCCTGGCTTTCGAATCGAGG
NGAACNANAGAAGGATAGCAAAACATCGGCTTAAAAGGNACTTAAAANAG
GAAAANACTGAAAGAGAGCTCTTGCCCCCATACACTAGACTAACGTGGGA
ATGGAAAATTAATGTATGGGATAGAGGGAATGCCAGACTCCAGGAGGAGA
GCTTCCTTGAAGCTCTTTGCCTCATGTAGCTGCACCTTNTTCAAGCCCTC
TTCACTTAATCTTTTCTTGACCAGTAGCGCGTCGGCATCTGCTTTGATGG
TGTTCTTGGGATTCAGTTAGTCGAGAATTTTTATTTTTTTTCTTTTTGCA
CCCGACACGCCCCTAAACGGAAAATTCGCGCCCCGGAAAGTTTCTTCTAT
CCCCTTGCTGGGGGTCCAGTGTTTNTNCCCCCCCCCTCCCCCTTGTTCCT
TTTTTCTTCCCCCTTTTCCCTGTACCCCCCCCTTTTCCTTCCTTCCCCTC
TCTATCTCTCCCCACCTTCTTTCCCTTTTGCCCCCTCCTTTTCTCTATTT
CCCCCCTCTCATTTTCTCTCTTTCTCTTTTCCCTTATCCCTACCTTTTCT
CCCTTTTATCTCCTCCATCCTCGTCCTATTTTTTTTTCCCCCCCACTACC
TTTCTTCCCCCCGAATTTTTTCTTCCCCCCTTTTCCCTTTTTCCCTTTTT
CCTTACCTTTTTTACCCTTCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_a07.b1 MSMg01no443_a07.b1 CHROMAT_FILE:
MSMg01no443_a07.b1 PHD_FILE: MSMg01no443_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:28 2005
         (237 letters)



>mm_chr2_67294325_67294960
          Length = 636

 Score =  404 bits (209), Expect = e-117
 Identities = 227/233 (97%), Gaps = 1/233 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatcagcatacatataggcatgggngccttttatttacccttaaaggccctcacacgc 60
           |||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||
Sbjct: 432 ttaatcagcatacatataggcatggg-gccttttatttaaagttaaaggccctcacacgc 374

                                                                       
Query: 61  acacgcatatgcacacatatgagcttgggaatggacaggtactcaggaaatgttgacagg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acacacatatgcacacatatgagcttgggaatggacaggtactcaggaaatgttgacagg 314

                                                                       
Query: 121 atgtagttgaacatggtttcagtgagtagatgatattatgcttttgggatgacaggtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atgtagttgaacatggtttcagtgagtagatgatattatgcttttgggatgacaggtatg 254

                                                                
Query: 181 cacgggatggtagttgtgacagctgacaacccatgttgggtgaatggggacta 233
           || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 catgggatggtagttgtgacagctgacaacccatgttgggtgaatggggacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 636
Length adjustment: 9
Effective length of query: 228
Effective length of database: 627
Effective search space:   142956
Effective search space used:   142956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)