BAC Information

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BAC

Clone NameMSMg01-443F19
Chromosome2 (Build37)
Map Location 72,702,489 - 72,702,732
singlet/doubletsinglet
Overlap genenone
Upstream genePdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik
Downstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443F19.T7 (MSMg01no443_f19.b1)MSMg01-443F19.TJ (MSMg01no443_f19.g1)
ACCAG532786AG532787
length750750
length of high quality
(start - end)
244 (74 - 317)426 (77 - 502)
definitionCHROMAT_FILE: MSMg01no443_f19.b1 PHD_FILE: MSMg01no443_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:56 2005CHROMAT_FILE: MSMg01no443_f19.g1 PHD_FILE: MSMg01no443_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGG
AATTCATGGGGTTTCCGGAAGCCAATTTCATCAAGGGCCGAAGGAAAATG
AAAAGGAAGACAGCAGGCGTAATTGCTGTGAGCAACAGCTTCCCGCTGAG
AGAGAAGGGCTTTACCATCAGCTCGGTAAGAATACATCCAGGCAAATACC
GAAAACATGGAAATAAACACTTCTCATAAAATCAGAACCGGAGGACAAAA
GGGCGCCCAGAGCCTTGCTATGTGTAGCAGAAAAGAGAGCGAGCAAAGGC
CAGGTGAGGCGGTAATAGAATTTTATAAGCGAGAAAATTACATCTCTGTG
GGCATCATTAGGGTGAAGGAAAGCAGGCCAATGGAAGGCGCTTAAAATGT
AAGGGAGCAAAGCATCAGACCCGCCATGGGTCAAATCCCAGAGGAGCAAA
TGGTGCTGTAAAGGAAATTTCTTTATAATAAAAAAGGAATAAGGTGGAAG
GGTGGGAGGAAAGATGGCAGCCAGGAGTCAGGGAAACTGGGTCATACTAG
GCTGTCTTACCACTGGCTACGTCTCCTTGGGCACCCATCCTGAGCTTCTG
GGTCAGGCTACTTGGTCCTGTGGCATCACAGGCTTAATCCAGTGCAGATC
TGTAACATTTTTGACAGGGTGACCCCCTTTAGGCCCCCACCCCCCGACCA
AATTATAAATCCTCTTTTGAAAAAAGGTTAACCAAGCTTTTTTTTACTAA

NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGGTATATTGTGTCATCGTGCCC
AGTGTTTCTCATTGCTTTGTGTAGATGTATATTTCTATCAAGCAGCTAAC
TCAGACACCCACAAACAAACAGTGGATGGAGCATGGAGACTCTTATGGAA
GAATAGGAGGAAGGATTGTGGCCCAGGAGGTGATAGGAACTCCACAGGAG
TCAACTAACCCGGACTTTTGCAAGGACTCTCAGGGACTGAACCACCAACC
AAAGAGCATACACCAGCTACCTATGTCTCCCCACACCTATGTAACAGATA
TGCAGCTTGGTATTCATGTGGGTCCCGAACAGCTGGACTGTTGGAGAGAG
GGGTGAGTATCCCAAGAGCTGTTGTCTGTATGTGGGATATGTTCTAGCCT
TGTCTGGCTTCAGTGGGAGAGGATGCACCAAACCTTGCAGAGACTTGATG
TGCCACGGTAGAGGGATACTGAGGGGACCTCCACCCATTCACAGGATGAG
GGGATGGAGTGTTTCAAATTTCCCTTTTTTTTTTTCTCTCCCTTTTCCAT
TTTACCCTCTCTCCCCCCCCCCCTTATATATACCTCCCTCCCTCTATTCT
CTTTTACTTTTCTATTTCTCTATACCCCTCCTTTCCCCTCCCCCCTTTCC
CCCTCCTCTTTCTTCGCTTTTTTCTCCCTACCTTCCCCCCTTTCTCTTCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_f19.b1 MSMg01no443_f19.b1 CHROMAT_FILE:
MSMg01no443_f19.b1 PHD_FILE: MSMg01no443_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:56 2005
         (244 letters)



>mm_chr2_72702289_72702932
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttcatcaagggccgaaggaaaatgaaaaggaagacagcaggcgtaattgctgtgagc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatttcatcaagagccgaaggaaaatgaaaaggaagacagcaggcgtaattgctgtgagc 385

                                                                       
Query: 61  aacagcttcccgctgagagagaagggctttaccatcagctcggtaagaatacatccaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacagcttcccgctgagagagaagggctttaccatcagctcggtaagaatacatccaggc 325

                                                                       
Query: 121 aaataccgaaaacatggaaataaacacttctcataaaatcagaaccggaggacaaaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaataccgaaaacatggaaataaacacttctcataaaatcagaaccggaggacaaaaggg 265

                                                                       
Query: 181 cgcccagagccttgctatgtgtagcagaaaagagagcgagcaaaggccaggtgaggcggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgcccagagccttgctatgtgtagcagaaaagagagcgagcaaaggccaggtgaggcggt 205

               
Query: 241 aata 244
           ||||
Sbjct: 204 aata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)