BAC Information

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BAC

Clone NameMSMg01-443I15
Chromosome2 (Build37)
Map Location 138,706,840 - 138,707,087
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443I15.T7 (MSMg01no443_i15.b1)MSMg01-443I15.TJ (MSMg01no443_i15.g1)
ACCAG532921AG532922
length1,149744
length of high quality
(start - end)
---247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no443_i15.b1 PHD_FILE: MSMg01no443_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:10 2005CHROMAT_FILE: MSMg01no443_i15.g1 PHD_FILE: MSMg01no443_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACACAATAACTCGAGGGTTTGAGAAGGAACACNCGNCATNTCTTGCTTT
CCTTCTGACGGGGCCACCAACGACAATATACGGAGTCACCGATGCGTCAG
AGACACACACCTGTCGCGAAGCGCGTTATCTGTGCTAGATGTGGCAAGGT
GAGAGGACGGAAACATCAAGAGCGACCACCGCAAAACAATAGCAAACCAA
GATAAACCTGTGGAGATACGGTACCCACCCGCCACTTACGTCCCATAATA
GCTAACGGCGTGTCGATCGGGATAATTGTAGGCGGGTGCGGCGAAATTGG
GCGAGGGGNTACCCGAAATTATTCGCTTCCACCACCACTTGGCGGAAGAA
ACACGAAAACAGCGGAAAAACGGCGAGTGAGAATGCAAGTATCGTCGTCG
TGACGCTAACAAATGCGCGGGGCAATGAGAGCATGCGAGATACGAGCGTA
CGATGTAAACGGCGCACATCGCGCGGCACGGAAACTAGCATATACATATA
TCATTATCGCAACGCGACCGCGTATCCGAACATCGCGCCCCCAACTATAT
TTAATATAACACGAGTAAATTGGCGCCCAGACACAAGCCTGTATGCGGTG
CTTAAGAGTTTAGTACCTACACGCAAGCGCGGGTGTCTAACGCTCGCTGC
GTCTGATGAATAAACCAACCCCGCGCCGAAACCAGCTATTGCGGCGCGCA
TCTCCATACATCTACTCCCGCGCCCTTAGTCCATATATCGGGGTGAATAT
TAAAGAAACCGCGGCACGCCGGCGGTATTACCCCTAGGCCGCTGGTGTCA
CAGTGGCTGCACCCCATACAATTAGTTTCCACACTGCACCCCGCCCGTTT
CTTAGCGGCACCGCGTTACTTTTTATTCGTGACAAACACTCGCAATATCT
CTCTACGCGTCTCGCCACACATTACGAGGCCAGTTGCTCCGTTGATGGTC
ATAATATGTATAAGAGGAATGATGTATGAGAAGAGGCGCCGCGTATGATT
CTGTTGTGTTTCGTTTTAATCGCTACGCGCGCCCGTCGGCGCTCTATCAG
CGTGTGTATTAGGCCGCGCGTGGAGGGTGGCCTTCTTCTTATACANCGCG
CGATTCTCCTGACGCAGTAATCGGTGTCCCTATTCTTTCCTTGACGACG
TTCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCATCTGCTGTGAAGAGAGATATTT
GATGAGCGCAAGAACCACACTTATTTTGGGGTATGGAGATAAGTAAGTAA
AATACAGTTAGTTATATACTGTTAGTAAATTAGCAGTCATTGGGTAAATG
ACCTCACTAGCCGTGGTTAGTTAGAAAGGTTTACAGTATCAAGCATAAAT
GATTTTCTATTGATAAGCCCTTAAGTGTAATCAGACAGCTGTTGGGTATT
CTTAAGACATAGGGGGCAGTANCTTACTATTGGGAATGTCTTTCTGGGGC
AGTCATTATTTGGACTGTAAGCTGGACTTTCTCCTCTACTCTTTGAATGA
ATTTATTTTTAATTTTTAAAGAGTCTCCTATGCATTATGATTTTTTCTTA
TGAAGCATTTGGTTCCTAAGTGCCACATTTTTATCTATATGAAAAATATG
CCAAATATGAGGTTCTTAGACTTTTTTCCATTTTATAATTATAAATGCCG
ACTAGAAGCTGATACCAGCGAAATCCTTTTGGAATTATGAATTGGTAGAG
AGGGATTTCCGGCCTTTTATTTTACATTCCCTAACACCATTTTTATTCTT
CCACCATATGCTTTTTTTTGCCCCCCATTTTATTTAAGGCGAACAATTGG
GCTTTTTCCCTTATTAATTATCCCTTTTTTTCCCTTCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_i15.g1 MSMg01no443_i15.g1 CHROMAT_FILE:
MSMg01no443_i15.g1 PHD_FILE: MSMg01no443_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:10 2005
         (247 letters)



>mm_chr2_138706640_138707287
          Length = 648

 Score =  426 bits (220), Expect = e-124
 Identities = 241/248 (97%), Gaps = 1/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatctgctgtgaagagag-atatttgatgagcgcaagaaccacacttattttggggta 59
           |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttcatctgctgtgaagagagcatatttgatgagtgcaagaaccacacttattttggggta 260

                                                                       
Query: 60  tggagataagtaagtaaaatacagttagttatatactgttagtaaattagcagtcattgg 119
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 cggagataagtaagtaaaatacagttagttatatactgttaggaaattagcagtcattgg 320

                                                                       
Query: 120 gtaaatgacctcactagccgtggttagttagaaaggtttacagtatcaagcataaatgat 179
           ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gtatatgacctcactagccatggttagttagaaaggtttacagtctcaagcataaatgat 380

                                                                       
Query: 180 tttctattgataagcccttaagtgtaatcagacagctgttgggtattcttaagacatagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctattgataagcccttaagtgtaatcagacagctgttgggtattcttaagacatagg 440

                   
Query: 240 gggcagta 247
           ||||||||
Sbjct: 441 gggcagta 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space:   152082
Effective search space used:   152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)