Query= MSMg01no443_m01.b1 MSMg01no443_m01.b1 CHROMAT_FILE:
MSMg01no443_m01.b1 PHD_FILE: MSMg01no443_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:27 2005
(518 letters)
>mm_chr2_152249967_152250884
Length = 918
Score = 574 bits (297), Expect = e-168
Identities = 334/357 (93%), Gaps = 20/357 (5%)
Strand = Plus / Minus
Query: 1 atcatctgacctctggaagtacaagcatgcacatgatgcccatacttacacaccagcaaa 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atcatctgacctctgcaagtacaagcatgcacatgatgcccatacttacacaccagcaaa 293
Query: 61 acacctgtatacataaaataaaaacaaatatttaagagagaaagaaagctgaggcaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 acacctgtatacataaaataaaaacaaatatttaagagagaaagaaagctgaggcaggag 233
Query: 121 aatggagtttcaggccagcctcaagaaaaaa--aaaa-------gggggggctggtgaga 171
||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 232 aatggagtttcaggccagcctcaagaaaaaaagaaaaggggggggggggggctggtgaga 173
Query: 172 tggctcagtgggtaagagcacccgactactcttccgaaggtccagagttcaaatcccagc 231
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 172 tggctcagtgggtaagagcacccgactgctcttccaaaggtccagagttcaaatcccagc 113
Query: 232 aaccacatggtggct------cattttttctgtaacaagatctgactcccttttctggag 285
||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 112 aaccacatggtggctcacaacca-----tctgtaacaagatctgactcccttttctggag 58
Query: 286 tgtctgaagacagctacagtgtacttacatataataataaataaatctttaaaaaat 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 tgtctgaagacagctacagtgtacttacatataataataaataaatctttaaaaaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no443_m01.g1 MSMg01no443_m01.g1 CHROMAT_FILE:
MSMg01no443_m01.g1 PHD_FILE: MSMg01no443_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:27 2005
(515 letters)
>mm_chr2_152127967_152128881
Length = 915
Score = 940 bits (486), Expect = 0.0
Identities = 505/516 (97%), Gaps = 10/516 (1%)
Strand = Plus / Plus
Query: 1 tcttacgtggttgggaagatggctcagaggacctgggttcagttcccagcacatttaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttacgtggttgggaagatggctcagaggacctgggttcagttcccagcacatttaagg 260
Query: 61 tggcttacaaccatttgtaactctagttccagaaggttcaatgtccccttctggcctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcttacaaccatttgtaactctagttccagaaggttcaatgtccccttctggcctcca 320
Query: 121 atggcaccagagagaagtgctaaggttccttggcattctagaattctttaattcagtaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggcaccagagagaagtgctaaggttccttggcattctagaattctttaattcagtaca 380
Query: 181 agctgttgattaacgactttgtaagccatgtagtgatgggaaatctggggaaagcactgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgttgattaacgactttgtaagccatgtagtgatgggaaatctggggaaagcactgg 440
Query: 241 gaacaagtgctgcagagcaccagtgccattgcccgccctgccacccctgctacccctgct 300
||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 441 gaacaagtgctgcagagcaccagtgccattgcctgccctgccacccctgc--c------- 491
Query: 301 acccctgccaccc-tgccaccctgccaccctgccaccctgttcatgtggcagtggactct 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acccctgccacccctgccaccctgccaccctgccaccctgttcatgtggcagtggactct 551
Query: 360 gtgtccagtgttctgggacttatcaaatctcggtgtccctgctgtgtaccacatactaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gtgtccagtgttctgggacttatcaaatctcggtgtccctgctgtgtaccacatactaga 611
Query: 420 tgtgattaaatgattcatgtgctaaaagtctgatgatgtagtgcacagtggatgctaggt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgtgattaaatgattcatgtgctaaaagtctgatgatgtagtgcacagtggatgctaggt 671
Query: 480 tgctacatgttacacttgctatggatatttgagact 515
||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgctacatgttacacttgctatggatatttgagact 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
