BAC Information

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BAC

Clone NameMSMg01-443N18
Chromosome2 (Build37)
Map Location 7,411,619 - 7,412,029
singlet/doubletsinglet
Overlap geneLOC100040648
Upstream geneCugbp2, LOC100040659
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443N18.T7 (MSMg01no443_n18.b1)MSMg01-443N18.TJ (MSMg01no443_n18.g1)
ACCAG533165AG533166
length731748
length of high quality
(start - end)
329 (80 - 408)418 (87 - 504)
definitionCHROMAT_FILE: MSMg01no443_n18.b1 PHD_FILE: MSMg01no443_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:35 2005CHROMAT_FILE: MSMg01no443_n18.g1 PHD_FILE: MSMg01no443_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCACTCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXCTAATTCAAGAGCA
TCCGCGGAATTCCTTTATCTCCAGAGAAAATGGTGAGAAGAAGGAGTCTG
TAATGGTTATTCTTCTTTGCCCATTGACTGAACTGGAATTATCCAGGAGA
CACACCCCTGGGTATGTCTTTCAGGGCAATTCCAGATAGATTTAGCTGGG
TTGACAGCCTAGAATGTGTGAAATGGGGCAGGAGAGGGGGAGCTAACTGA
ATAACGGTGCTCAGTTCTCTTCTCTTTCCAGACTGTACTTGCAGTGTGGC
CAGGGGTCTCACACTTCTGCTATTTTTTCCAACAATGACAGACTGCATCC
TCTCCAACTGTGAGGAAAATAAACCCTTCCTTACACTGTTTTTGCAAGGT
ATCATGGTGCAGAAATGAGAGAGGTAACTAAAACAGGATATAATAAAATT
GAAAACATTATCTTCACTCCGACTAGAGCAGAAACGCATTGTGTCAGAGG
ATCCCTCTGTGATGCTGCTGTAATGTGGGCACCCGTGCGCTTGCCCGTGT
ACGCGAACGGAACCGCCTTGTGCCTGCCCCGTGTATATCCCGAAAGGCAT
GTTATGAATTTCTTTCGAACATACCCCCCCCCTTTTCTCCCTCTCACCCA
CGTCCTTCGTTGGACTTTAACCCCCTACACTTGTTTTCCCCGCCCCTATC
CACTATTACTCTGTCCCTTTTCTTCTCCCCC
TCTATTTTCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGTTCCACTGAA
TGATTGTGAGATCTGGATGAGTTCGTCATTCTGTGGCGACTGCGGCTTTG
TATCCTCAGGCTATGTTTGTTATGACCACCACTCTGAGATTGTATTCTCT
CAAATATGGCTGACTCAGTGCTATGCAATAGACATTTATAGGTGCTTGTG
GATGGTGGGGCATTTTGTATTCAAATACCTTACACAACTGAAACCTAAAG
AATAAAACTACTCGTGACTTTTGAAAGTGATCTGGCTATCCTGTTAAAGA
AATCTGAAATTGGATACCAGCTTGTGGTCATTTGCAGGGGGTCACTGAAA
GTTCTTGTAAACATCAGGATCCACCAGTTCATGAGATGACCACCAAAATA
CAGATTTGACTTTCAAGGAATCTTTGGCTTTACTCTGTGTTGCACACCTT
TTGGTTTATTAAACAAGGTGCTAATTGTGTTATCTCTGACAATACAAAGG
AACATTGTCCCACCTATTTTATTATGCGTACCCAGAAACCTTGGTTCATG
AAGTTGAATCACGCCGCCCACTTCCTGATTATGCCCTATTTTTTTTTTAA
CGCTCTCCCAACTTTCCTCCCAATAATTGGGCGGTATTCCCCCCCTTTCT
TCTCTCATTTCTCATTCCCCCCGTTTTTCCCCCTCCTTTTCCCTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_n18.g1 MSMg01no443_n18.g1 CHROMAT_FILE:
MSMg01no443_n18.g1 PHD_FILE: MSMg01no443_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:35 2005
         (418 letters)



>mm_chr2_7411416_7412233
          Length = 818

 Score =  702 bits (363), Expect = 0.0
 Identities = 399/411 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   gttccactgaatgattgtgagatctggatgagttcgtcattctgtggcgactgcggcttt 63
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 614 gttccactgaatgattgtgagatctggatgggttcgtcattctgtggcgactgcagcttt 555

                                                                       
Query: 64  gtatcctcaggctatgtttgttatgaccaccactctgagattgtattctctcaaatatgg 123
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||  ||
Sbjct: 554 gtatcctcaggctatgtttgttatgaccaccaccctgagattgtattccctcaaatgcgg 495

                                                                       
Query: 124 ctgactcagtgctatgcaatagacatttataggtgcttgtggatggtggggcattttgta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctgactcagtgctatgcaatagacatttataggtgcttgtggatggtggggcattttgta 435

                                                                       
Query: 184 ttcaaataccttacacaactgaaacctaaagaataaaactactcgtgacttttgaaagtg 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtcaaataccttacacaactgaaacctaaagaataaaactactcgtgacttttgaaagtg 375

                                                                       
Query: 244 atctggctatcctgttaaagaaatctgaaattggataccagcttgtggtcatttgcaggg 303
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 374 agctggctatcctgttaaagaaatctgaaattgggtaccagcttgtggtcatttgcaggg 315

                                                                       
Query: 304 ggtcactgaaagttcttgtaaacatcaggatccaccagttcatgagatgaccaccaaaat 363
           ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 314 ggtcactgagagttcttgtaaacatcaggacccaccagttcatgagatgaccacaaaaat 255

                                                              
Query: 364 acagatttgactttcaaggaatctttggctttactctgtgttgcacacctt 414
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 acagatttgactttcaaggaatctttggctttactctgtgttgcacacctt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)