BAC Information

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BAC

Clone NameMSMg01-444C12
Chromosome2 (Build37)
Map Location 130,853,175 - 130,853,696
singlet/doubletsinglet
Overlap geneAtrn
Upstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, LOC100043768
Downstream geneGfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444C12.T7 (MSMg01no444_c12.b1)MSMg01-444C12.TJ (MSMg01no444_c12.g1)
ACCAG533391AG533392
length754740
length of high quality
(start - end)
332 (68 - 399)522 (78 - 599)
definitionCHROMAT_FILE: MSMg01no444_c12.b1 PHD_FILE: MSMg01no444_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:58 2005CHROMAT_FILE: MSMg01no444_c12.g1 PHD_FILE: MSMg01no444_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCAAGATACCTCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG
CCTGTGTCACCACTGCAGGGCTGGCGTTTTCTCTGTTGAGATTCCTTCTT
CTCAGATGACTCTGGCTTGAATAAAGCTGATAAACACTAACAAGCACAGA
ACGTCAGGGTGTTTTTTTTACCATTGTTGAGACATGAACTCATGTAGCCC
AGACTGACCTCTCAGACTTGCTAGTGTAACTCGGAGTGACTTTAAAATTC
TTAACCTTCTGCCACTGTCTTCCAAGTGCTGGGATTACAGACCATGTGCT
AACAGATCCAGTTTATGAGGCAATGGAAATCAAACCCAAGGCTTCATGCA
TGTGAGGAATCATTCTTCCTACTAACCTACATACCCAGACCCTAGGGAAC
TTGCTTGCTTGCGACAGGTTTCTTTATACTTTACGTTGGCCTTGAAATCA
CTTTGTAGCTAACGATGCATAATTTTTTGATTGCCCCGCATCTCAATTCC
ACGTGTTTGTATTATATGCCCGTTCCCCCCCTTCTGATTTAATTTCTCCA
GATTTTTTACCACCACTCGCCTTCTCGGAATTTCACTGCGTCAGGATCCG
CACAATATTCAAGGCTTCTTTCTCCTCCCTTCTAGACTGAAACCCCTTGC
TTCCATTCTTTTGGCCTTCTCCTTGGCCTTTCTTATCTATTACCCTTGCA
TATG
NACGATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATGGACGGACAAGCCCTAGT
GCAACTTCCCTTTCTTTCTTTTGGCCAAGAGTCCCCTGGCTTGTTACGGA
GATGAAAGGCTAGACCACGCAGATACTTATGTGCTGGGTTTTGGTAGAGA
TGTGGGGAGCTCCTGACTGTATAGGGGATGAGGCTGGGATCATTTCTAGA
ACTTTCTGCTCTTTAATAGTGATGCAAAGAGTCGTGTTTTGAGAGGTGAG
CCTTCTAGCAGTGTTTTGTGTTTTTGTGATTTATGGTTCAGCTTGGAACT
GTCACTCCACAAGAGTCTTGGGAGGAGTGGGTTAGTGCAGGGCTTAGAGA
AAGGCTCCCTCTTCAACACTGCATTTAAAGGTGAAACACTACAGTTTTTG
TTCTTCTGATTGTTAACTTCTCCAAACTCATACATTTGAGCACTGTTGCC
TAGAGGGCTATTCTAGTCAGGTGATAGCAGAACTGTAGGACATGAAGAAG
GAGAGGACAGGTGTGTGAGGCTGCTGCATAATGCCAGAATACGGAGCACC
ATATATGGGGAAATGCAATGTCCAGGCAGGGTCCTGGGATCATAGCAGAG
GTCTGTTTCTCCTCCTAACGTGTTAATCTTGGCTCTTCCCCTTAACCCAT
GTGCTTTTCATTCTCATTACCGTTCTCCTCCTCCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_c12.g1 MSMg01no444_c12.g1 CHROMAT_FILE:
MSMg01no444_c12.g1 PHD_FILE: MSMg01no444_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:58 2005
         (522 letters)



>mm_chr2_130852975_130853896
          Length = 922

 Score =  971 bits (502), Expect = 0.0
 Identities = 517/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttatggacggacaagccctagtgcaacttccctttctttcttttggccaagagtcccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cttatggacggacaagccctagtgcaacttccctttctttcttttggccaagagtcccct 663

                                                                       
Query: 61  ggcttgttacggagatgaaaggctagaccacgcagatacttatgtgctgggttttggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ggcttgttacggagatgaaaggctagaccacgcagatacttatgtgctgggttttggtag 603

                                                                       
Query: 121 agatgtggggagctcctgactgtataggggatgaggctgggatcatttctagaactttct 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agatgtggggagctcctaactgtataggggatgaggctgggatcatttctagaactttct 543

                                                                       
Query: 181 gctctttaatagtgatgcaaagagtcgtgttttgagaggtgagccttctagcagtgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gctctttaatagtgatgcaaagagtcgtgttttgagaggtgagccttctagcagtgtttt 483

                                                                       
Query: 241 gtgtttttgtgatttatggttcagcttggaactgtcactccacaagagtcttgggaggag 300
           |||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtgcatcagtgatttatggttcagcttggaactgtcactccacaagagtcttgggaggag 423

                                                                       
Query: 301 tgggttagtgcagggcttagagaaaggctccctcttcaacactgcatttaaaggtgaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgggttagtgcagggcttagagaaaggctccctcttcaacactgcatttaaaggtgaaac 363

                                                                       
Query: 361 actacagtttttgttcttctgattgttaacttctccaaactcatacatttgagcactgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 actacagtttttgttcttctgattgttaacttctccaaactcatacatttgagcactgtt 303

                                                                       
Query: 421 gcctagagggctattctagtcaggtgatagcagaactgtaggacatgaagaaggagagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gcctagagggctattctagtcaggtgatagcagaactgtaggacatgaagaaggagagga 243

                                                     
Query: 481 caggtgtgtgaggctgctgcataatgccagaatacggagcac 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caggtgtgtgaggctgctgcataatgccagaatacggagcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)