BAC Information

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BAC

Clone NameMSMg01-444D01
Chromosome2 (Build37)
Map Location 67,935,990 - 67,936,180
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1322, Cmya3, LOC621171, LOC227995
Downstream geneB3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444D01.T7 (MSMg01no444_d01.b1)MSMg01-444D01.TJ (MSMg01no444_d01.g1)
ACCAG533417AG533418
length871991
length of high quality
(start - end)
212 (47 - 258)---
definitionCHROMAT_FILE: MSMg01no444_d01.b1 PHD_FILE: MSMg01no444_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:01 2005CHROMAT_FILE: MSMg01no444_d01.g1 PHD_FILE: MSMg01no444_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATACTTTGCGGCGTTATACGACTCCTATTTCCTCACGAATTCGCGGAATT
CTCTATACTGCCCTCCCATGAAATGAGATTAAGAGACTACACATTTCAGG
TGGTCTACTTTAACATGGTATGTGGAGTTTAATTATTGTTATATAAGTTT
ATATTGTTCTCAAGAGAGAAAAGTCACTGCTAAAGGAGACAAATCTGAAC
TGTGTTTATCTTGGACAATGGCGCATAGCATTGTAAGGAATAGTTGTTTG
AATAGAAGACTTTACTTATAAATCCTGATTTTCCTTATGTGCTCTATGTT
ATCCCTTCGACTACATGCTTTTGTGATACTATGGTTGATCACACCCCTGA
AAGATCTTTTTGCAGCGCAACTCTCCCCCCTAATGTCAATTCACTGGGAA
GTTATCACCCCCCTCCATCTACACAATAGGCTCATCACCAAGCTATGGTG
ATTCACCACCTGCCCGGTGATTTTGGTTTGGCATCCTTTTCTGCTGATAC
CCTAACTTTCAGCACATTTATTCACTTCTGTTTCCACCCTTCTCTTCCTG
CCCACTTGGATAAATGGTGGCAAAATGTCTTTTGTCCGTCCTTATTTACT
CTCCCTTCTTGTTTTCTCCTTTTTTTTCCCCCCTCCGATTATCTTCTATC
TTTTCCCTCTCCCAATATTTTTACCCAACCCTTTTTCTATTTTCCCCCCC
CCGTTTTTTTCTCCCGCTCCCTTTCGCCCGCCTTTGTTTTTGTTCCCCTT
TTTTTTTTCCTTGGATTCCCGCCGCCAATTTAGGGGCTCCCCTTTTTTCT
CTCTTCTCCTCTTTCTCACCTCCCCCTTTTGTTTTCCTCCCGCACCTTTT
GTTCCTTTTTTCCCCCCCTCT
GCCAACGAAATGAAGGCGGGGAGGGGGGGGGGGGGAGGNCGGGAATACAA
AAGAGGGGGGGNNGANNNNATANGATTGTAACCCAAAAGAAAGGTGGNNG
CNNGGNAAGNGAAGAAGAGTTGGTAGATAATTGTAGTAGTAGAATTTGAA
CACCCAGGATTATAGAGTGAGGGGGGAAAAAAGGGATAGAGAGGGAAGGT
TATGAAGGAGGATGTAGGAGAGGGTGGTAGATATTAAATGAATTGAGGAG
AAATAGGTGTTGTAGAGGGAGGTGAAGTACTGAACTAAGAGATGGGAGGA
AGAGGTATATGTTTTTTGTAAAGGAGAGAGAGATAGTATAATAAATATAA
GTTTTGGAAATAGCTGGCTGGATTTAAGTGGGGGGGGAAAAATTTTTTTT
TATTTATGGATAAAGAAATATTGATGAATGCGCGCTGTTGGGCGTTTTGG
ATTTTGCCGTGTTTGGGAGTATTTGTTCTTTGTTAGAGGTAGGTGGGGGT
GGTAGGGGTGTTCGTGGTTTTAGTTTTATTTAATGGGAGTAGATGTAATG
TGATTAAAGTATGGATCGAGCGTTTTGTGTACTTTGTGTGGTGACCGATG
GAGGGGGGTTGGTTTTGAGTACGTGGTAGTGTGTTTATTAATTAGTGGGT
CAGGAGAGCCGCGAGATAGTGAGAGGAGTGTTATTTGTGTTGGATTAAAA
AAAATAATGCGGTAATTTTGTTTACTGACTATGCTGTTTGATTCATTAGG
CGTTTTAATCGTGCGTATTATTTAAGGGGGGACGGCATAGAAATTTTTAT
CGTATGTATATTTTGTTATGTGAGTGTTAGAGGTGTGGGTTGGTCCGGGC
CGCTTATATGGGTGTGATCAGTATATATTATTGCATTATACAAGCAGAGT
TCTAGCGGGCTAATATTATTATTTTATGATATGATAATGGCGGTGGGAGG
GAAGTATAATTAAATCCTTGTCTGTAGTGATAGATCTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_d01.b1 MSMg01no444_d01.b1 CHROMAT_FILE:
MSMg01no444_d01.b1 PHD_FILE: MSMg01no444_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:01 2005
         (212 letters)



>mm_chr2_67935770_67936380
          Length = 611

 Score =  319 bits (165), Expect = 7e-92
 Identities = 185/195 (94%), Gaps = 7/195 (3%)
 Strand = Plus / Minus

                                                                       
Query: 21  catgaaatgagattaagagactacacatttcaggtggtctactttaacatggtatgtgga 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 catgaaatgagattaagagactacacatttcaggtggtctactttaacatggtatgtgga 352

                                                                       
Query: 81  gtttaattattgttatataagtttatattgttctcaagagagaaaag---tcactgctaa 137
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||    ||
Sbjct: 351 gtttaattattgttatataagtttatattgttctcaagagagaaaagtcatcac----aa 296

                                                                       
Query: 138 aggagacaaatctgaactgtgtttatcttggacaatggcgcatagcattgtaaggaatag 197
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct: 295 aggagacaaatctgaactgtgtttatcttggacaatggtgcatagcattgtaaagaagag 236

                          
Query: 198 ttgtttgaatagaag 212
           |||||||||||||||
Sbjct: 235 ttgtttgaatagaag 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 611
Length adjustment: 9
Effective length of query: 203
Effective length of database: 602
Effective search space:   122206
Effective search space used:   122206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)