Query= MSMg01no444_i03.b1 MSMg01no444_i03.b1 CHROMAT_FILE:
MSMg01no444_i03.b1 PHD_FILE: MSMg01no444_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:25 2005
(499 letters)
>mm_chr2_179039784_179040683
Length = 900
Score = 847 bits (438), Expect = 0.0
Identities = 485/502 (96%), Gaps = 5/502 (0%)
Strand = Plus / Plus
Query: 1 ggagactttcaggaacttgatcctatgcttgagcgtgccacccactgctaaagccactgt 60
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagaccttcaggaacttggtcctatgcttgagcgtgccacccactgctaaagccactgt 260
Query: 61 ggaccccaa--tgtactcagagctgggga-ttttgtcttcagggctgtgccttctagacc 117
||||||||| ||| |||||| |||||| |||||| |||||||||||||||||||||||
Sbjct: 261 ggaccccaacgtgt--tcagagatggggatttttgttttcagggctgtgccttctagacc 318
Query: 118 cagagagcaagctggctcaccaggctgcaacttgctctgagatgattgtcctaggtgcct 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagagagcaagctggctcaccaggctgcaacttgctctgagatgattgtcctaggtgcct 378
Query: 178 aaaattgtgcctgggagtcactgggtctaaatccacgctgtgtcagcttctaggttaata 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 379 aaaattgtgcctgggagtcactgggtctaaatccacgctgtgtcagcttctaggtcaata 438
Query: 238 cacagactctgctatagtatatgttagggctctggatgctaaagggctgtgtgttttcat 297
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 439 cacagactctgctagagtatatgttaaggctctggatgctaaagggctgtgtgttttcat 498
Query: 298 aacattaatcaatgctaatttgtgctaagaaaaaatatacatataaccctgaaaatatgc 357
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 499 aacataaatcaatgctaatttgtgctaagaaaaaatatatatataaccctgaaaatatgc 558
Query: 358 tgataaaggccaagtccccatttgaaagtctgactggtgaagtaacataccatgatttta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgataaaggccaagtccccatttgaaagtctgactggtgaagtaacataccatgatttta 618
Query: 418 tgtttctttggggaaaaaaattgcatttcagtaattcagcagcccccagcttccagtgtc 477
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 619 tgtttctttggggaaaaaaaatgcatttcagtaattcagcagcccccagcttccagtgcc 678
Query: 478 tttgaaaaaagacgttcccatg 499
||||| ||||||||||||||||
Sbjct: 679 tttgagaaaagacgttcccatg 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 900
Length adjustment: 10
Effective length of query: 489
Effective length of database: 890
Effective search space: 435210
Effective search space used: 435210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_i03.g1 MSMg01no444_i03.g1 CHROMAT_FILE:
MSMg01no444_i03.g1 PHD_FILE: MSMg01no444_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:25 2005
(541 letters)
>mm_chr2_179192577_179193518
Length = 942
Score = 598 bits (309), Expect = e-175
Identities = 354/383 (92%), Gaps = 25/383 (6%)
Strand = Plus / Minus
Query: 160 ctcacaaactcatatacacttacacacactcacacacatatacgtacacacacacacaca 219
||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 942 ctcacaaactcatatacacttacacacactcacacacatatacgt--------------a 897
Query: 220 cacacacacacacatatatatatatttatatatacactcatacacatatccacacacact 279
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 896 cacacacacacacatatata------tatatatacactcatacacatatccacacacact 843
Query: 280 catgcatttgtatgtgtatacacacaagcatgtgcatacatgtacacacatgcatgcata 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 catgcatttgtatgtgtatacacacaagcatgtgcatacatgtacacacatgcatgcatg 783
Query: 340 cacactcatatattttcacagagagagagagaggaagagagagattccagaaacttttag 399
|||||||||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct: 782 cacactcatatattttcacacacagagagagagga----agagattccagaaacttttag 727
Query: 400 aatgtctat-ttgagttaaaatctaaataattcctttgtttgatgtacagtacagcaata 458
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aatgtctatgttgagttaaaatctaaataattcctttgtttgatgtacagtacagcaata 667
Query: 459 gtctcttactaccaccacactgaaaaacagaaatttgccaagattattattgtactatga 518
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gtctcttactaccaccacattgaaaaacagaaatttgccaagattattattgtactatga 607
Query: 519 cttttaagaacactccccccacc 541
|||||||||||||||||||||||
Sbjct: 606 cttttaagaacactccccccacc 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space: 494892
Effective search space used: 494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
