Query= MSMg01no444_k03.b1 MSMg01no444_k03.b1 CHROMAT_FILE:
MSMg01no444_k03.b1 PHD_FILE: MSMg01no444_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:35 2005
(434 letters)
>mm_chr2_180310368_180311201
Length = 834
Score = 688 bits (356), Expect = 0.0
Identities = 402/426 (94%), Gaps = 14/426 (3%)
Strand = Plus / Plus
Query: 9 tcagcatcatattcctatttgattggctaattgaaaacattgtggttgctagggagaaat 68
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 209 tcagcatcatattcttatttgattggctgattgaaaacattgtggttgctagggagaaat 268
Query: 69 gaaacgagcatatatttttattttgggaaaatgctttacttgggaggcattcttaacaag 128
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gaaatgagcatatatttttattttgggaaaatgctttacttgggaggcattcttaacaag 328
Query: 129 tggtgtgcttgcaactgttgttgaggtgcggagttaatttaccaaagcagaccctgcctc 188
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 329 tggtgtgcttgcaactgttgttgaggtgcggagttaatttaccaaagcagacccggcctc 388
Query: 189 caagttctcccagcatctctctctcagtccctaactgttacagggcatgactggcatatc 248
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 389 caagttcttccagcatctctctctcagtcccttactgttacagggcatgactggcatatc 448
Query: 249 acacacacacacacacacacacacacacactctcacacacacacacacacacacacacac 308
|||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 449 acacacacacacacacacacacacacacac--------------acacacacacacacac 494
Query: 309 actatgtacacagactctcaccaggtacctagaactcacagacactctcctgcctctgcc 368
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 actatgcacaaagactctcaccaggtacctagaactcacagacactctcctgcctctgcc 554
Query: 369 tcccaactactgggataataggcatgctcctctatatccactcctcaagcagcattttct 428
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 555 tcccaactcctgggataataggcatgctcctctatatccactcctcaagtagcattttct 614
Query: 429 gagaga 434
||||||
Sbjct: 615 gagaga 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_k03.g1 MSMg01no444_k03.g1 CHROMAT_FILE:
MSMg01no444_k03.g1 PHD_FILE: MSMg01no444_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:35 2005
(239 letters)
>mm_chr2_180476454_180477094
Length = 641
Score = 447 bits (231), Expect = e-130
Identities = 235/237 (99%), Gaps = 2/237 (0%)
Strand = Plus / Minus
Query: 1 attatcagctcatgaaaccacaagctctacaagaaataagtgcgggaggtagaaaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attatcagctcatgaaaccacaagctctacaagaaataagtgcgggaggtagaaaaacaa 378
Query: 61 ggccagaaatggggggggggg--ttcaccttgttctggggtctgtgatgtctggactgcc 118
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggccagaaatggggggggggggtttcaccttgttctggggtctgtgatgtctggactgcc 318
Query: 119 aggcacctgccaacccaggacacatcagtagtgctgagagatccacagggcgggaaccag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aggcacctgccaacccaggacacatcagtagtgctgagagatccacagggcgggaaccag 258
Query: 179 ggtctgcaaggcaggtgaggaccctggcccactgcacaccggcccagctggagtggc 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggtctgcaaggcaggtgaggaccctggcccactgcacaccggcccagctggagtggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 641
Length adjustment: 9
Effective length of query: 230
Effective length of database: 632
Effective search space: 145360
Effective search space used: 145360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
