BAC Information

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BAC

Clone NameMSMg01-445D12
Chromosome2 (Build37)
Map Location 60,271,763 - 60,414,366
singlet/doubletdoublet
Overlap genePla2r1
Upstream gene2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176
Downstream geneItgb6, Rbms1, ENSMUSG00000075325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445D12.T7 (MSMg01no445_d12.b1)MSMg01-445D12.TJ (MSMg01no445_d12.g1)
ACCAG534201AG534202
length734739
length of high quality
(start - end)
269 (362 - 630)508 (69 - 576)
definitionCHROMAT_FILE: MSMg01no445_d12.b1 PHD_FILE: MSMg01no445_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:21 2005CHROMAT_FILE: MSMg01no445_d12.g1 PHD_FILE: MSMg01no445_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,271,763 - 60,272,031)(60,413,868 - 60,414,366)
sequence
XXXXXXXXXXXXXXXXXXXXXXCTAAATACAAAACAGGCGCGGAANNCCN
GAGTACCTGAAAGGTCTTCAGCTCCCGAGGGTCCTTGGGAATTGTCACCA
GGAAGCACTACACATAACAACAACACTAACTGTTTATCCCTGCACTGTTC
TATGAGAACTCAAACAATTTCCCAAAGACACCGAAGGTCAGTCTTGGAAA
TGATAATTTTCTTAGGCAGAGAACTCATTTGTCTTCTGTTTGCTCTGCAG
GCATTAATGAAGCAAGGACAGACACTGCTTTGGGGCGAGCGATTTGTCTC
ATTCTCAGTAGTTTGGCTGAAGAAGAAGCAGAGATGTGTTTGTCATGTGT
TATGTCACACCACTGTCTTCTACTCAGTGGAGAAAGGCACTCTTCCTAAG
AAGGAGTCAGTGCCTGCAAGCTTTATAGTAGGGAACTTGGAAGAAAGGAG
TAGCTTAGCTAGACTATCTATAAGCAGAGATGAAAGGACCTGGAGGATTT
AAGTTCACTAGAAGCTCATTTAATAGAAAGCACACAGGAAGTTACAGAAA
AACAAGAGGAGAAGTGAGAAGAAGACAGAGAAATAAAGATGACCGAGGAA
CCAACTTCACCACTGATGCTAAATGGAACACATATTTTTTTTTTTGAATT
CTCACAGGGAGATTGGTCACTTTAACAGAAACTGCATCATGCCACACACA
TGAAAGGCAGAGGACCACTTCTAAGGGCCAGCTN
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATACATGCACATAATGTAGTTTGGTCTTATT
CATTCCTTGCTTCTCTTTCTAGACCCTCACACACAACTTCATGTTGGTTT
TTTTTTTAAGCCCACCGAGTCCAGCTTATATTTTCTACACATACTCAAGC
ATGCAGCCGCCCACTGTCCATGGTTAACCTGTCAGACACAGCCCTTAAAG
AAGACTGAGTCTCTCTCCCCAGGATCCATCAATTATCAATAGCCCCTCAG
CTGTACACCATTGTTCAAGACTGCTCACTTCTAATCAGAGTTCAAAAGCC
ATTAAATAGAGGCAGGACAGTCTGTTCAGTACGTGTGTCACAATATTTGG
AGAGTTATGTGAAAAGTGGAATGTCACAACATATATAAATCTTAACTCCA
AATAAACCACAAACCTAACAGTAAAGCAGTTTGAAAAGAGCCATAGGGGA
AAATCTTTACATCTTTGGGCTGAAGATTCCTTAGACTCAAAAGTATGAAC
AATAAAAGAAGGAATGTATAACCACGCATCACCAAAAACAAGCACAAACA
AACTTGCACTTTTCAAAAGATAATATAAAGAGGAGAGAATATATAGCTAC
AGAACATGAAAAAAACTTTTCAAATTATATATCACGTAAGGGAATAACCT
CCCGAATAAAAATAAAAAAGGAAATCCCCTCAAAACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_d12.b1 MSMg01no445_d12.b1 CHROMAT_FILE:
MSMg01no445_d12.b1 PHD_FILE: MSMg01no445_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:21 2005
         (269 letters)



>mm_chr2_60271563_60272231
          Length = 669

 Score =  505 bits (261), Expect = e-147
 Identities = 267/269 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtcttctactcagtggagaaaggcactcttcctaagaaggagtcagtgcctgcaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtcttctactcagtggagaaaggcactcttcctaagaaggagtcagtgcctgcaagc 260

                                                                       
Query: 61  tttatagtagggaacttggaagaaaggagtagcttagctagactatctataagcagagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatagtagggaacttggaagaaaggagtagcttagctagactatctataagcagagat 320

                                                                       
Query: 121 gaaaggacctggaggatttaagttcactagaagctcatttaatagaaagcacacaggaag 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gaaaggacctggaggatttaagttcactagaagctcgtttaatagaaagcacacaggaag 380

                                                                       
Query: 181 ttacagaaaaacaagaggagaagtgagaagaagacagagaaataaagatgaccgaggaac 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacagaaaaacaagaggagaggtgagaagaagacagagaaataaagatgaccgaggaac 440

                                        
Query: 241 caacttcaccactgatgctaaatggaaca 269
           |||||||||||||||||||||||||||||
Sbjct: 441 caacttcaccactgatgctaaatggaaca 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no445_d12.g1 MSMg01no445_d12.g1 CHROMAT_FILE:
MSMg01no445_d12.g1 PHD_FILE: MSMg01no445_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:21 2005
         (508 letters)



>mm_chr2_60413566_60414473
          Length = 908

 Score =  911 bits (471), Expect = 0.0
 Identities = 492/499 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catacatgcacataatgtagtttggtcttattcattccttgcttctctttctagaccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catacatgcacataatgtagtttggtcttattcattccttgcttctctttctagaccctc 742

                                                                       
Query: 61  acacacaacttcatgttggttttttttttaagcccaccgagtccagcttatattttctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acacacaacttcatgttggttttttttttaagcccaccgagtccagcttatattttctac 682

                                                                       
Query: 121 acatactcaagcatgcagccgcccactgtccatggttaacctgtcagacacagcccttaa 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acatactcaagcatgcagccacccactgtccatggttaacctgtcagacacagcccttaa 622

                                                                       
Query: 181 agaagactgagtctctctccccaggatccatcaattatcaatagcccctcagctgtacac 240
           ||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 621 agaagactgagtctccctccccaggatccatcaactatcaacagcccctcagctgtacac 562

                                                                       
Query: 241 cattgttcaagactgctcacttctaatcagagttcaaaagccattaaatagaggcaggac 300
           ||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagggctcaagactgctcacttctaatcagagttcaaaagccattaaatagaggcaggac 502

                                                                       
Query: 301 agtctgttcagtacgtgtgtcacaatatttggagagttatgtgaaaagtggaatgtcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtctgttcagtacgtgtgtcacaatatttggagagttatgtgaaaagtggaatgtcaca 442

                                                                       
Query: 361 acatatataaatcttaactccaaataaaccacaaacctaacagtaaagcagtttgaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatatataaatcttaactccaaataaaccacaaacctaacagtaaagcagtttgaaaag 382

                                                                       
Query: 421 agccataggggaaaatctttacatctttgggctgaagattccttagactcaaaagtatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccataggggaaaatctttacatctttgggctgaagattccttagactcaaaagtatga 322

                              
Query: 481 acaataaaagaaggaatgt 499
           |||||||||||||||||||
Sbjct: 321 acaataaaagaaggaatgt 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)