BAC Information

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BAC

Clone NameMSMg01-445H04
Chromosome2 (Build37)
Map Location 99,101,695 - 99,102,132
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042886
Downstream geneLOC621386, LOC668702
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445H04.T7 (MSMg01no445_h04.b1)MSMg01-445H04.TJ (MSMg01no445_h04.g1)
ACCAG534376AG534377
length770766
length of high quality
(start - end)
459 (35 - 493)454 (64 - 517)
definitionCHROMAT_FILE: MSMg01no445_h04.b1 PHD_FILE: MSMg01no445_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:39 2005CHROMAT_FILE: MSMg01no445_h04.g1 PHD_FILE: MSMg01no445_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATAAT
ATAGCACCTATATGTCAACAGTAATGTCATAAACTTATGTGACAATACTG
CAGACAAAAGATATACAAATTCAAATGTTCTGATGTAATGTATAATTTTC
AGAGTAATGAATAGCTGATCTTAGATAAAACAAAGTAATGTACAGCTGGA
GAGTTGGTTCAGCAGTCAGACTACTTCTTGCTTTCGCAGATTATACAGGT
GATACAGGTTTAATTTCTGGTGTCCACATATTGGTCCCAGTCATTCAATA
ACTTTAGGTTTAGGATATCTGATGCTCTCTTCGGAGTTACACAGGTACGA
GGCATAAACTTGGTGGGTAGGTGAATGCATACAAACACACACACACACAC
ACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGGTTG
AGAGTAGTTTATCACCTCTCTTCTTTCTTTTCTTTTTTTTTTTGGCCCTC
CTATATTTTTTCTATCCGGTGCCGCCATTTTTTCACCTATCTTTATACTC
TTTTCTCTTCCTTTTATTCACTTTTTCCCTTTTTTTTTTTTTTTTTCCTC
TACCCTTCCCTCTTTTCTTCTTTTCCTCTTATCTTTCCCCATCTCCATTA
CTTTCTCCTTTTATTTTCACCCTCCCCTCTCTTTTTATCCCTCCCCCCGA
CTATTTCCACTGTTTTTCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCACCTGAGGAATAGCGAATGGCAGAGAAGCACCTGA
ACAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGCAGACTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCAGAAAATTGGACATAGTACTAACAGAGGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGACCCAACTGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCTCCACAGAGGAATGGATACAGAAAATGTGGTACAACTA
CACCATGGAGTACTACTCAGCTATTATAAAGAATGAAGTTATGAAATTCC
TAGGCAAATGGATGGACCTGGAGGGCATCTTCCTGAGTGAGGTAAAACAT
TCTCCAAGGAACTTCCACAATATGTACCTCCCTGATAAGTGCGAAATTAA
CCCCATTCCTAAGGAAACCCCAGAAATTAGATAATATTTTGGCTAACCCC
CTGCAACCTCTGTAAAAAATGAAAATTGCGAGGGAGACATTAATCCCCTT
TCTTTATAATTGGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_h04.b1 MSMg01no445_h04.b1 CHROMAT_FILE:
MSMg01no445_h04.b1 PHD_FILE: MSMg01no445_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:39 2005
         (459 letters)



>mm_chr2_99101491_99102349
          Length = 859

 Score =  750 bits (388), Expect = 0.0
 Identities = 429/452 (94%), Gaps = 16/452 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccataatatagcacctatatgtcaacagtaatgtcataaacttatgtgacaatac 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccataataaagaacctatatgtcaacagtaatgtcataaacttatgtgacaatac 264

                                                                       
Query: 65  tgcagacaaaagatatacaaattcaaatgttctgatgtaatgtataattttcagagtaat 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 tgcagacaaaagatatacaaattcaaatgttctgatgtaatgcataattttcagagtaat 324

                                                                       
Query: 125 gaatagctgatcttagataaaacaaagtaatgtacagctggagagttggttcagcagtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatagctgatcttagataaaacaaagtaatgtacagctggagagttggttcagcagtca 384

                                                                       
Query: 185 gactacttcttgctttcgcagattatacaggtgatacaggtttaatttctggtgtccaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gactacttcttgctttcgcagattatacaggtgatacaggtttaatttctggtgtccaca 444

                                                                       
Query: 245 tattggtcccagtcattcaataactttaggtttaggatatctgatgctctcttcggagtt 304
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 445 tattggtcccagtcattcaataactttaggtccaggatatctgatgctctcttcggagtt 504

                                                                       
Query: 305 acacaggtacgaggcataaacttggtgggtaggtgaatgcatacaaacacacacacacac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acacaggtacgaggcataaacttggtgggtaggtgaatgcatacaaacacacacacacac 564

                                                                       
Query: 365 acacacacacacacacacacacacacacacacacacagagagagagagagagagagagag 424
           |||||||||||||||||||||||              |||||||||||||||||||||||
Sbjct: 565 acacacacacacacacacacaca--------------gagagagagagagagagagagag 610

                                           
Query: 425 agagagagagagagag--agagagagagagag 454
           ||||||||||||||||  |||| | |||||||
Sbjct: 611 agagagagagagagagcaagagggggagagag 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)