BAC Information

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BAC

Clone NameMSMg01-445M06
Chromosome2 (Build37)
Map Location 54,517,069 - 54,517,543
singlet/doubletsinglet
Overlap geneGalnt13
Upstream geneLOC207933, Rprm, LOC666913, LOC626563, LOC100041792, LOC100042878
Downstream geneLOC666936, Kcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445M06.T7 (MSMg01no445_m06.b1)MSMg01-445M06.TJ (MSMg01no445_m06.g1)
ACCAG534618AG534619
length741747
length of high quality
(start - end)
551 (59 - 609)477 (67 - 543)
definitionCHROMAT_FILE: MSMg01no445_m06.b1 PHD_FILE: MSMg01no445_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:05 2005CHROMAT_FILE: MSMg01no445_m06.g1 PHD_FILE: MSMg01no445_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAA
TTTACACAACAGTGAGAAACTGGGGAATTGGGCTATGCACAGAGAGGCTG
TTCTCCAGTTGAGCTGAGGTCTGAACCCCAGGAAGGATGATAATTCACCT
ACATGAAACAATAGGCGTTCCCTCATGCTCCTGGAACTCTGGCTCCTGCC
TAAGTTAGCACCCCACAGGCCCCCCCCCAAGAGATGCATGGTCAGTAGTC
ATGTAGACAATGTCTCAAGCTTCTGACCTTCAGGCTAAACTCCTCCCCAC
TTACCTATTATCAGTAAAGACCATAAAAAGGGCTGTTCAGCCCCTGCTTG
CTCTCTTACTTGTCTCTCTTACTTCTCATTCTCTTACTTCTTACCCATCA
CCCTCTCTCTCCTCTCTCTTTGTCTTCTCCTGTCTTCTCTCCTCTCCTCT
CTCCCTCTTACTCTTTCTTTCTCTCTAGCCTTCCCCCTCTCTTTTTCTCT
CTCCCCCTTCTCTCTTTCTCCATGCTTTTCTATAATAAAGCTCTAAAACC
ATANAATGTCTCTGCTCATCAAGATCCACTGAACTCATAACCCACGGTGG
CTTTAGCAAAGTAGCCCGAGGCTCCCAGGTAGGGCTGCCCCTTGCCACCC
CTGAAGAGTGAGTCAGAGGCTTATATGCTCACCACAGGGTGAGTGGAAAG
TATATGCCACCCCCCCTATGCCCGAATGACCCCCGAAAAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTCCAATTAATCTTTATTTATTTTCCCACTTAG
TTTTGTTAGTTCTCCTTTCTACTCTTGTTTGTCTAGGACATCTAAATATA
TGTTTGGAATAATTCTGCACTGATAAAAAAAACATTTTAAATTAAAGAAA
ACTTTTCAATTTGTACTAGTTCTTTGGGGGAAAAAAGTGTTTTGTAAATT
CCTGCAGAAGTTTGAAATTATAGCAATTGAAAACTCTGAATTGATACTAA
TTTCATTGCTAAATCAAAGAAAGTAGAAGCATAATTTTAATGTAAGCAGA
AATTGTGGTGTTTGAATACTCATTCTCAGCTGTGTATGTCTTTATTTTAT
TCATGTGAAACAATGGAAATAGAACTTCATAAAGACATAATTACCGCCTT
AAGCTACAACTGGGGAAAACATGGGTAAAGATTTCATTCACGTATATTGG
CATCATCTGTTAGGGTAGAATCAAAATGAGTGGGTTTTTTTTATTGTTTG
TTGGNNNTNGNNNNGNNNNNTNTNGTTNTNNTTTTTTTGTGGTTTTGTTT
TTTGTGTTTTGGTTTTTGTGTTTTTTTTTTGTNGTTATTTTTTTTTTTNT
ATTTTTTTTGTTTGTGTTGTTTTATAGTATATTGTTCGTGTTTTTTTTTT
ATGGGTGTTTTTAATTTTTGTTGGTTATTAGTAGTTTAGTTGTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_m06.g1 MSMg01no445_m06.g1 CHROMAT_FILE:
MSMg01no445_m06.g1 PHD_FILE: MSMg01no445_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:05 2005
         (477 letters)



>mm_chr2_54516869_54517743
          Length = 875

 Score =  876 bits (453), Expect = 0.0
 Identities = 471/477 (98%), Gaps = 2/477 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccaattaatctttatttattttcccacttagttttgttagttctcctttctactctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttccaattaatctttatttattttcccacttagttttgttagttctcctttctactctt 260

                                                                       
Query: 61  gtttgtctaggacatctaaatatatgtttggaataattctgcactgataaaaaaaacatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gtttgtctaggacatctaaatatatgtttggaataattctgcactgat-aaaaaaacatt 319

                                                                       
Query: 121 ttaaattaaagaaaacttttcaatttgtactagttctttgggggaaaaaagtgttttgta 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 320 ttaaattaaagaaaacttttcaatttgtactagttctttggggg-aaaaagtgttttgta 378

                                                                       
Query: 181 aattcctgcagaagtttgaaattatagcaattgaaaactctgaattgatactaatttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aattcctgcagaagtttgaaattatagcaattgaaaactctgaattgatactaatttcat 438

                                                                       
Query: 241 tgctaaatcaaagaaagtagaagcataattttaatgtaagcagaaattgtggtgtttgaa 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgctaattcaaagaaagtagaagcataattttaatgtaagcagaaattgtggtgtttgaa 498

                                                                       
Query: 301 tactcattctcagctgtgtatgtctttattttattcatgtgaaacaatggaaatagaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 499 tactcattctcagctgtgtatgtctttattttattcatgtgaaacaatggaaatagaacc 558

                                                                       
Query: 361 tcataaagacataattaccgccttaagctacaactggggaaaacatgggtaaagatttca 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcataaagacataattacctccttaagctacaactggggaaaacatgggtaaagatttca 618

                                                                    
Query: 421 ttcacgtatattggcatcatctgttagggtagaatcaaaatgagtgggtttttttta 477
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 619 ttcacgtatattggcatcatctgttagggtaaaatcaaaatgagtgggtttttttta 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 875
Length adjustment: 10
Effective length of query: 467
Effective length of database: 865
Effective search space:   403955
Effective search space used:   403955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)