BAC Information

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BAC

Clone NameMSMg01-445M19
Chromosome2 (Build37)
Map Location 171,597,891 - 171,598,327
singlet/doubletsinglet
Overlap genenone
Upstream geneDok5, LOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445M19.T7 (MSMg01no445_m19.b1)MSMg01-445M19.TJ (MSMg01no445_m19.g1)
ACCAG534644AG534645
length740766
length of high quality
(start - end)
514 (36 - 549)437 (68 - 504)
definitionCHROMAT_FILE: MSMg01no445_m19.b1 PHD_FILE: MSMg01no445_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:08 2005CHROMAT_FILE: MSMg01no445_m19.g1 PHD_FILE: MSMg01no445_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTCTG
GATTTCCATTGAAAGTTAATCATAACAAACATCACCGCCCTCGTCTTTCA
CAGAACGTAGAGATCTGAACGTTTCCTTGCTGCAGCAGGCTTTCCCAGTT
TGATTTCTGTTGCTATAATAAAACACGGTGATCAAAAGCAACTTGGAGAG
AGAAGGATTTCTGGGGCTTATCCATGATCATAATCTGCCACGGAGGGAAG
TCAAAGCCAGAGCCTGGGGGAAGAAACATAGAAGAATGCTGCTTACTGCC
TCACGCTCTGTTTTTCTCTCTGGCTCCTGCTTAGTGCTTAGCTAGCTTTC
TAGTGTCCCAGGCCCTCCTGCCTAGGGATGGTGCAGCCCACAGTGGGCTG
CAGTCCAACATCAATCATTGGCCAAGACAATCTCTCAAAGGCATGCCTGC
AAGCCAATCAGACTTAACCAATTCGTCAACTGTGTTTCCTTCTTCCTAGG
TCACTCTAGGTTGTATCAAATTAACAACTAAAAAGAAAAAAAAAAACAGC
ACACAGACATTAACCTTTACCCAAGTGGAATTCTATCATGGGGGTGGGTT
TGCCATACTCGGNGAGGGTTTGCATTAAATCCTCCCTCTCCGGGAAAGGA
AAAAAGTTGAAAAGTTTATTCCCCCCAAGCTGCCCTCTATGGCAATTCTG
TGCCCAAAAGTGTAATGACATGACCTCCCCTCCCTTACTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTTCTAACTGACAGGGTATCATCTCCCTAAGA
GGAACCTTCAAGTCGATGGATTCCACTGTCCATTTGGGTGGCTGTTGCGG
GAAACAGTGGGAGATTTGAGGTCAGATGTTCACCTGAGACGCATGCACAG
CAGTGTGTAAGTATCCAGGGCACAGTTTTGCTCTGCTTACTCAGAAGGCC
TTAGTCAGTTTCCAGTTTTAGCTCCTGGTCATAAACAGGTTTCTCTCTTA
ATGATGGAATTCTCCTTCCTTGGTCTTTCTGGTTTTTTAATTAATCAAGA
AACAGTCCTGGCCACTGGACTTTTCCAAGCAAGTAGAGGATTAATGATTC
TCAGCGATGCTACCAAGCTCTAACCTCACACCCCAAACCCTCCGGCTGTG
AAATGAAGGCACCATTGAACAGATATGCTAATGGGCTGTCTACATTCAAG
TCTCAGATTCTGGAGCTGNTATTGCAGTTGAGTGACCCTGGATTTAATAN
ACCGGGAATCCTACTGATAAATGGAATAAGTCCCTTCCCAAACATCCTAA
TGGAGAGCCTACTAAATTCCCCGGCTGTTTGGTGTGTTCCTGTTTGAACG
AAAAACCCGTTTTTCTCCTCCCAAAGGGATGGGTTGATTTTCTTTTTTTT
CCCCCCTCTCCCCTTCTGTGTCCTCTGCCCCCTGATTTTTTCATTATTTT
AACCCCGTTCTAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_m19.g1 MSMg01no445_m19.g1 CHROMAT_FILE:
MSMg01no445_m19.g1 PHD_FILE: MSMg01no445_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:08 2005
         (437 letters)



>mm_chr2_171597691_171598527
          Length = 837

 Score =  822 bits (425), Expect = 0.0
 Identities = 434/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttctaactgacagggtatcatctccctaagaggaaccttcaagtcgatggattccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 acttctaactgacagggtatcatctccctaagaggaaccttcaagtcgatggattccact 578

                                                                       
Query: 61  gtccatttgggtggctgttgcgggaaacagtgggagatttgaggtcagatgttcacctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtccatttgggtggctgttgcgggaaacagtgggagatttgaggtcagatgttcacctga 518

                                                                       
Query: 121 gacgcatgcacagcagtgtgtaagtatccagggcacagttttgctctgcttactcagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gacgcatgcacagcagtgtgtaagtatccagggcacagttttgctctgcttactcagaag 458

                                                                       
Query: 181 gccttagtcagtttccagttttagctcctggtcataaacaggtttctctcttaatgatgg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gccttaatcagtttccagttttagctcctggtcataaacaggtttctctcttaatgatgg 398

                                                                       
Query: 241 aattctccttccttggtctttctggttttttaattaatcaagaaacagtcctggccactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aattctccttccttggtctttctggttttttaattaatcaagaaacagtcctggccactg 338

                                                                       
Query: 301 gacttttccaagcaagtagaggattaatgattctcagcgatgctaccaagctctaacctc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 337 gacttttccaagcaagtagaggattaatgattctcagcgacgctaccaagctctaacctc 278

                                                                       
Query: 361 acaccccaaaccctccggctgtgaaatgaaggcaccattgaacagatatgctaatgggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 277 acaccccaaaccctccggctgtgaaatgaaggcaccattgaacagatatgctaatggcct 218

                            
Query: 421 gtctacattcaagtctc 437
           |||||||||||||||||
Sbjct: 217 gtctacattcaagtctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)