BAC Information

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BAC

Clone NameMSMg01-445M24
Chromosome2 (Build37)
Map Location 60,596,982 - 60,765,885
singlet/doubletdoublet
Overlap geneRbms1
Upstream geneTanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6
Downstream geneENSMUSG00000075325, Tank, Psmd14, Tbr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445M24.T7 (MSMg01no445_m24.b1)MSMg01-445M24.TJ (MSMg01no445_m24.g1)
ACCAG534654AG534655
length764774
length of high quality
(start - end)		431 (32 - 462)393 (70 - 462)
definitionCHROMAT_FILE: MSMg01no445_m24.b1 PHD_FILE: MSMg01no445_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:09 2005CHROMAT_FILE: MSMg01no445_m24.g1 PHD_FILE: MSMg01no445_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,765,466 - 60,765,885)(60,596,982 - 60,597,374)
sequence
ATTTGGGGGCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCT
TCCCTGTACTGTTACTGGTGTAGGAAAAGCTGTAAATCCTCTCAGGGCTT
AGCAAGCTCAGACTTACTGTAAAGGGCCGCAGAGAGGAAGCGATGGTCTT
CTAAAACATACTCCCATGCGCACCAGTTCAATCAATATTGACGAACTGGT
CTCGTAGGAAGACGATATGTGCATTAAACCTCAGCTCATTTATTCGTGAG
TCAGTGAAGGGGCTGGGAGTATTAGTGTCAGGCGCTGCTCTGAAGCATTG
CTTTCTGAGTAATGGAAAAGTGAAATAAATTATTTATTAAGAACTTTGGT
CATAAAATATCCACGGGTTACTGGAGGCAATGAGATTAAGCATAGAAAAT
GTGAAATAATACACATTTGTGTTCACAGTTGATAATGATCCATGAGAGAA
GGAAGCAGAAAACATTGTTTTCAACAGGTCAAAAACAGTGGTCATGCCGA
TTCCAGCATCTGCACGGAATTGGTAAGATTAGCCTGTATACCTTCCTTAG
TTATTTGGAATAAGGCTTTGGGAATATAGGATTTAGAACGCTTCCCTATT
CCATCCTTTTGAGGAATTGGGGCTTTAAAAAAATGGGGGAAACAGTTTAA
CCCTTTTTTTGTGGGATCTTACTACCTCGAAAATAGGCCCTGCTTTTCTT
TTCTCCCCGGTTATATTTTTTTACTGGACCCTCTACCCTTCTCTTGTTGA
ACACCCTTTTCTTT

AAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTTTAATCGTGTTAAAAAAAATCTACAGA
AGGAAGATAAGAAGACAATGCTATCAATTGCAAAGGTTAAGGCAGTTAGA
ACTCTTGACAAACTGGTCAGTCTAAACGAGATGAAGCAATCATTTGGAAC
CAATGTCAGTTTGCCCACTAGGTGCGTATTTACTGAACATTAGGCACCAG
GGAGCAATGAGGGTAAGGCACAGATGGGCCTCACCCTTGAGAAAGTGACT
GTCTAAGCAAAAGAAATAAACATGTAAACAACCCAAATTAGTGAAAAGTG
TTATAATCAAGCTATGGGCTACGTTTTAGGAATACTGATGGATGAGGATT
AATTGTAGAACTTAGTTAGACACTAGCCCTCTCAGTGCACACAGGCTATT
CTACTATTTATTAAGCATAACCAAATACAATCTCTGATAATCAGGAAAGT
AAGATTAGCAATTCTGTGTAGTCTTCACCAATTTCTAGGGAGGGAAAAAA
AAAAATGTCTGAAATGGGGACCTAGGAAATCAAATGGGGGGGGGGGGGGG
TAAAAAATCTATAGTATTATCCCTTACTCTCCAGGTGTTCCCTCTTCTTT
TCTTTCCTTTCTGCAGTTTATCACCTATTCATTATTTTTTACTAGCGCGT
TTACCCCCCCTTGTATTCTTTCTTATTCTGTCACCCTCTTTCCTCTCCAC
TACCCTCTTCACTTACTCTTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_m24.b1 MSMg01no445_m24.b1 CHROMAT_FILE:
MSMg01no445_m24.b1 PHD_FILE: MSMg01no445_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:09 2005
         (431 letters)



>mm_chr2_60765255_60766085
          Length = 831

 Score =  774 bits (400), Expect = 0.0
 Identities = 415/420 (98%)
 Strand = Plus / Minus

                                                                       
Query: 12  ggaattcttccctgtactgttactggtgtaggaaaagctgtaaatcctctcagggcttag 71
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 631 ggaattcttcccagtaatgttactggtgtaggaaaagctgtaaatcctctcagtgcttag 572

                                                                       
Query: 72  caagctcagacttactgtaaagggccgcagagaggaagcgatggtcttctaaaacatact 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 571 caagctcagacttactgtaaagggccgcagagaggaagcgatggtcttctaaaacatacc 512

                                                                       
Query: 132 cccatgcgcaccagttcaatcaatattgacgaactggtctcgtaggaagacgatatgtgc 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cccatgcgcaccagttcaatcaatattgacgaactggtctcgtaggaagacgatatgtgc 452

                                                                       
Query: 192 attaaacctcagctcatttattcgtgagtcagtgaaggggctgggagtattagtgtcagg 251
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 451 attaaacctcagctcatttattcgtgagtcagtgaagggtctgggagtattagtgtcagg 392

                                                                       
Query: 252 cgctgctctgaagcattgctttctgagtaatggaaaagtgaaataaattatttattaaga 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cgctgctctgaagcattgctttctgagtaatggaaaagtgaaataaattatttattaaga 332

                                                                       
Query: 312 actttggtcataaaatatccacgggttactggaggcaatgagattaagcatagaaaatgt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 actttggtcataaaatatccacgggttactggaggcaatgagattaagcatagaaaatgt 272

                                                                       
Query: 372 gaaataatacacatttgtgttcacagttgataatgatccatgagagaaggaagcagaaaa 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaaataatacacatttgtgttcacagttgataatgatccatgagagaaggaagcagaaaa 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no445_m24.g1 MSMg01no445_m24.g1 CHROMAT_FILE:
MSMg01no445_m24.g1 PHD_FILE: MSMg01no445_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:09 2005
         (393 letters)



>mm_chr2_60596782_60597574
          Length = 793

 Score =  737 bits (381), Expect = 0.0
 Identities = 390/393 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttttaatcgtgttaaaaaaaatctacagaaggaagataagaagacaatgctatcaatt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ttttttaatcgtgttaaaaaaaatctacagaaggaagataaggagacaatgctatcaatt 260

                                                                       
Query: 61  gcaaaggttaaggcagttagaactcttgacaaactggtcagtctaaacgagatgaagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaaggttaaggcagttagaactcttgacaaactggtcagtctaaacgagatgaagcaa 320

                                                                       
Query: 121 tcatttggaaccaatgtcagtttgcccactaggtgcgtatttactgaacattaggcacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatttggaaccaatgtcagtttgcccactaggtgcgtatttactgaacattaggcacca 380

                                                                       
Query: 181 gggagcaatgagggtaaggcacagatgggcctcacccttgagaaagtgactgtctaagca 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggagcaatgagggtaaggcacggatgggcctcacccttgagaaagtgactgtctaagca 440

                                                                       
Query: 241 aaagaaataaacatgtaaacaacccaaattagtgaaaagtgttataatcaagctatgggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaaataaacatgtaaacaacccaaattagtgaaaagtgttataatcaagctatgggc 500

                                                                       
Query: 301 tacgttttaggaatactgatggatgaggattaattgtagaacttagttagacactagccc 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tacgttttaggaatactgatggatgaggattaatcgtagaacttagttagacactagccc 560

                                            
Query: 361 tctcagtgcacacaggctattctactatttatt 393
           |||||||||||||||||||||||||||||||||
Sbjct: 561 tctcagtgcacacaggctattctactatttatt 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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