BAC Information

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BAC

Clone NameMSMg01-445N24
Chromosome2 (Build37)
Map Location 144,227,591 - 144,227,981
singlet/doubletsinglet
Overlap geneCsrp2bp
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097
Downstream geneLOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik, Slc24a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445N24.T7 (MSMg01no445_n24.b1)MSMg01-445N24.TJ (MSMg01no445_n24.g1)
ACCAG534702AG534703
length827763
length of high quality
(start - end)
213 (67 - 279)391 (71 - 461)
definitionCHROMAT_FILE: MSMg01no445_n24.b1 PHD_FILE: MSMg01no445_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:14 2005CHROMAT_FILE: MSMg01no445_n24.g1 PHD_FILE: MSMg01no445_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CGCTATGTTCCCCAGGCTGGCCCCAATCTCATAGAGATCCACCTGCCTCT
ACCTCACAGTGCCATGATTAAAGGTGTGTGTCATCAGGTCCCGCTCCCCT
GACTTTTCTTTTGACCTCATGTATTCCGGAGCAGGTGCCTGAGGAGACCA
CAGTCTACGAATACAAACAGATGCACTAAAAAGGGAGGGGAGGTCAGGGG
AGGGCAGGAGAGGGGAGGGCATAGGAGGGGGAAGTNNCGCCCGGGGCCCC
CGGGCGCTTTTCCTGCTTTTTCGCCGGGGGCCGGCGGGTTCGCTTTTGTT
TTTTTTTTTTTCTCCCCCCCTCTCGGCGTTTCCTTTTTCTTTCCGTCCCC
TTCTGGTGTTTTTTATGCCCTCTCTCCCGTCCTCTTTTTCTTTTTTCTTT
CGTCTGTGCTTTTTCCTTTTTTTTGTTGTCGTTTTCGCCCTCCCCCCTTT
TTTTTGCTCTTTTCTTCCTTATTTCTTTTTATTCCCCGTTCTTCTTTTTT
TTTCTGTTTTACTATTTTTCCACGTTCATATTCTTTTTCCCCTATTTCTA
TCTCTCTATTTTACGTCACCTCGTTTGTATCCTCTTTCTATTTTGCTTTA
TTCCCATGTTCATAGATGGTATCCTCTTTCTTTTTTTAGTTTTCTTGATT
TTTTATTTTTATATCACTCTGTTTGTTTCTTTCCATCACCGCGTCTGTAC
ATTCTCTTTTATTTTTTCTCTTCCTCTCCTATGTTTTTACTCTTTTCTTT
CTCCTTATTTCTCTTTTGTCTTTTCTN
ATAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTCTGAACATAGATTAAGCCAGACCCCTC
TGGTACCCACCAGGGACTACATGAGGTGAAGTGAGAAACACAAACTGCAC
TTAGATATGTTCAGAAGTGCCCGACACAGGGCTGCTTCTCTAGCATGATC
AGAGGACAAAGGAGGGACTGTCCAACTCTGCTGGCCGCAGGAGATCATGA
AGAGAAAAGGCTACAGCAGTTTTGCTAATGACCTCTCTTCAAGTTTGCCC
AGAAACCCAGTGCTAGGCAAGGTGGATCAGGCTGCTGGCAGAGCTCGGCC
TCCACTCACTGATTAGATGGCATTCATTTAGAAACCGTCCCAAAGAGAAT
GGAGCTGGGGAGAGGGCTGAGTAGGTAAAATGCTTGCCATGCAAGTGTGA
GGACTTGAACCATGTTAAAGCCATGTAAAAGCAGGGCACACAGTGCATGG
GGAGCAGACACGCCATCAGTCTAGGCTTGAAAGGGAACTCCCGCTTGACG
GAAAACTCTTTGTTCCAAAAAAAAAAAGGGGATCTCTGGGTGGGGGGCAA
GGCTTTAATCCCATTCCCCCGGGGAGAAATGTAGGTAAAATCTGATTTCC
GTCTTCTTCTTTTCCACCTGGAATTTACGTTGTTCAATGTTTCCTTGTGA
CCCCCTCTCCTTATTTAATTTCTATAACAAGATTTACTATATCGACTATG
TATTCCCCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_n24.g1 MSMg01no445_n24.g1 CHROMAT_FILE:
MSMg01no445_n24.g1 PHD_FILE: MSMg01no445_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:14 2005
         (391 letters)



>mm_chr2_144227452_144228242
          Length = 791

 Score =  725 bits (375), Expect = 0.0
 Identities = 387/391 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgaacatagattaagccagacccctctggtacccaccagggactacatgaggtgaa 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 530 actctgaacatagattaagccagacccctccggtacccaccagggactacatgaggtgaa 471

                                                                       
Query: 61  gtgagaaacacaaactgcacttagatatgttcagaagtgcccgacacagggctgcttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtgagaaacacaaactgcacttagatatgttcagaagtgcccgacacagggctgcttctc 411

                                                                       
Query: 121 tagcatgatcagaggacaaaggagggactgtccaactctgctggccgcaggagatcatga 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 410 tagcatgatcagaggacaaaggagggactgtccaagtctgctggccgcaggagatcatga 351

                                                                       
Query: 181 agagaaaaggctacagcagttttgctaatgacctctcttcaagtttgcccagaaacccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agagaaaaggctacagcagttttgctaatgacctctcttcaagtttgcccagaaacccag 291

                                                                       
Query: 241 tgctaggcaaggtggatcaggctgctggcagagctcggcctccactcactgattagatgg 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 290 tgctaggcaaggtggatcaggctgctggcagagctcggactccactcactgcttagatgg 231

                                                                       
Query: 301 cattcatttagaaaccgtcccaaagagaatggagctggggagagggctgagtaggtaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 cattcatttagaaaccgtcccaaagagaatggagctggggagagggctgagtaggtaaaa 171

                                          
Query: 361 tgcttgccatgcaagtgtgaggacttgaacc 391
           |||||||||||||||||||||||||||||||
Sbjct: 170 tgcttgccatgcaagtgtgaggacttgaacc 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)