BAC Information

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BAC

Clone NameMSMg01-445P18
Chromosome2 (Build37)
Map Location 53,753,092 - 53,753,473
singlet/doubletsinglet
Overlap genenone
Upstream geneFmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933
Downstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445P18.T7 (MSMg01no445_p18.b1)MSMg01-445P18.TJ (MSMg01no445_p18.g1)
ACCAG534786AG534787
length753743
length of high quality
(start - end)
34 (370 - 403)385 (67 - 451)
definitionCHROMAT_FILE: MSMg01no445_p18.b1 PHD_FILE: MSMg01no445_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:23 2005CHROMAT_FILE: MSMg01no445_p18.g1 PHD_FILE: MSMg01no445_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCGCAANACGANNCCAATTTCGAGCNCGCGGNGGAANNCNGNGT
TTTCCGACGCGGGGGAAGNCACGGCNCAGNAACAGGCAAGGGANNGGGCC
GGTACGACACACANACCNACNAGNGGACAGGNNCNAAGCAGCAGAACNAA
AAANNNGGAGAAGGAACAACAGGCNNACGNNGNGCGGGGCAGCGGCAGGG
CGNCCGGGGCGGGGGGGGCAAAAGGGAGGGCGGATTTTCCNAAAAAGACN
GGCCGGAAACCNCAAACAAGCCCAGAGGGGANGAGGAACAAAAAGCAGGA
ATTTGTTTTTGCGAAGNGCAGGAAACAACAGGAGCGGACCAGGGGGTTTT
CAGCCCCACCGCGGCTGGTAAGAAGATCTGGGCAATGTTTTACTTTTCTA
GCCCGGGGTAGAATATGTGGAGATTTGGCGCGAGCGCTGCGCAGGTCGTG
ACCGCCGGCCCGGTCGAGGAAGAAGACGATGGGGGCGGGAGTCAGGGGCC
CAAGGGAGAGGCGAGACAATGTTTAGAGGGGAAATGAAAGTATCGAGGCG
GGGGGGCTGTAAGCCACACAGAGAGAGCAGCAAGAGATGGAGAGTTGGGC
CGGGGCGCCCCATGCCGCCGGGGTGGGGGGGGGTTTTTTTTTTTTTTTTT
TGAGGGGAGAGGAGGGACGAGGGGCAGTAGGTGTGGGCGAAATATGTACG
GCGCGGAGCCAGGAATATGCGCCAGCCGCTCCTATCTCACAGTGCGGGGT
TTT
CTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGACTGGGGCTTTGTAAAGTTCTATCCCACTCCA
TCATCAAGTAACTGGTATTCTAGGAAGATCAAAAATAAAGAACCGGGCTT
CAATAGCATGAATGTGGGTACTTTTAGAAATAGAGCCCAGATTCCCAGTT
CTCCAGACACCATAGGACACAATAGTAATCTAATGTCTCTAAACAATGAT
TTTTGTTCTTATTCAAAACTGAGAGTTTGGAAGAATAGTTATAGTAGGTG
AATTTATATATATTTTCTGTCACACAAATGCCAGGATTATAAGTGTCAGT
TTTCCTGATGGCCAGACAACACTTTTCCTCATTGTCTGAAATCCATTCTC
CTAATTATTCCTTTCAGTATGAGTAATTGGATATTTAGAAAAATTTACTT
GTAGTAGCTCCATGCAAATCCTCCCCCATATTAAATACTAAAAATGCTAC
TAAAAAATCTACTTCATTACTTCTAGCTGATTCGGTGAATCTTTTCTTCC
ACTTTAATTTTAATTTTTTTTCCCCCCGTTATTTTTCTTTGGCCGAATAA
CCTTTTGGGCCCCCCTGCTTTCTATGAACTGTTTTTTTTTTCGTTATTGT
GTCATTAAAATTTTTTTTTCTCCGCCTACCCAATTTTACTGTTATTGTTT
TTTCTCTTTTTATTTTTTCTTCCCCTTTGTGGTCCCTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_p18.g1 MSMg01no445_p18.g1 CHROMAT_FILE:
MSMg01no445_p18.g1 PHD_FILE: MSMg01no445_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:23 2005
         (385 letters)



>mm_chr2_53752892_53753676
          Length = 785

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactggggctttgtaaagttctatcccactccatcatcaagtaactggtattctaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgactggggctttgtaaagttctatcccactccatcatcaagtaactggtattctaggaa 523

                                                                       
Query: 61  gatcaaaaataaagaaccgggcttcaatagcatgaatgtgggtacttttagaaatagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gatcaaaaataaagaaccgggcttcaatagcatgaatgtgggtacttttagaaatagagc 463

                                                                       
Query: 121 ccagattcccagttctccagacaccataggacacaatagtaatctaatgtctctaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccagattcccagttctccagacaccataggacacaatagtaatctaatgtctctaaacaa 403

                                                                       
Query: 181 tgatttttgttcttattcaaaactgagagtttggaagaatagttatagtaggtgaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgatttttgttcttattcaaaactgagagtttggaagaatagttatagtaggtgaattta 343

                                                                       
Query: 241 tatatattttctgtcacacaaatgccaggattataagtgtcagttttcctgatggccaga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 342 tatatattttctgtcacacaaatgccaggattataagtgtcagttttcctgatggccaaa 283

                                                                       
Query: 301 caacacttttcctcattgtctgaaatccattctcctaattattcctttcagtatgagtaa 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 caccacttttcctcattgtctgaaatccattctcctaattattcctttcagtatgagtaa 223

                                 
Query: 361 ttggatatttagaaaaatttac 382
           ||||||||||||||||||||||
Sbjct: 222 ttggatatttagaaaaatttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)