BAC Information

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BAC

Clone NameMSMg01-445P21
Chromosome2 (Build37)
Map Location 64,777,862 - 64,819,118
singlet/doubletdoublet
Overlap geneGrb14
Upstream geneFign, LOC620544, LOC667291
Downstream geneCobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445P21.T7 (MSMg01no445_p21.b1)MSMg01-445P21.TJ (MSMg01no445_p21.g1)
ACCAG534792AG534793
length756757
length of high quality
(start - end)		503 (58 - 560)464 (67 - 530)
definitionCHROMAT_FILE: MSMg01no445_p21.b1 PHD_FILE: MSMg01no445_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:23 2005CHROMAT_FILE: MSMg01no445_p21.g1 PHD_FILE: MSMg01no445_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,777,862 - 64,778,364)(64,818,655 - 64,819,118)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCTCAT
TGACTAGAGGTGAGTTGTAGAAAGTGCTTATTCTGGTCTTAGCTGGAGCA
GATGCTTTTGTTTCTGTCTCACTGACCAGTTCCATTCACTGCTTATTTTT
CGGAAAACTCAGACCCTGGTTTCCTCTTCTCTTTTTCCCACATGCACCCA
GTTCCCTGAAGGAAACCCTCTGCCTAAAATGGCTTTCCTCAGTGCTAACA
GATCTCCACCTCCTTGAATATAATGTGTTGAAAGCCAAGGCCCATACCCT
AATTTTTCTTACCAGCAATCATAGAATGATCGTTCAATGACTTTCCCTAT
TCCATATCCAGCTTTAAGTCCCAAAGACAAGAAAGTCGAGATTCCAGAAT
ATATTTGTACCTAAAAGCAAAAACCATACCATGTCTGTGGGGTAGGGGGT
GAATATACACACAAGATAGAAAAAGACCTTAAAAGAAATGAAGGTGTGAT
GTACACTAAACTAGGAGTAAGTCCTAAAGACTCTGTGCTAAGTGAAATCA
GACAGACACAAAAAGACTAATAGTATATGACCCATAAAAGGTAGCAAGAA
CACTCTGATGCACAGTAACAGAGTGTAAAGTGTTTTTTTTTAAAGGCTGG
TTATGAGTCTACAAAGATTATTGTTTATTATGAAAAACCTCCTTTGTTAA
AAAAAGATTTTCTGCTAATAAATGCTGTTTCTTTCCGCTTTTTGTTCCTT
GGCCCT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTACAGATTATGAAAGAATTTATAAGCTATATA
ACCAATGCACTGTTAAGCACAGGCCAAAACACAAGAAGTAGATATAAAAA
TGTAGAAAGCAATAACCTCTATGACTTAGATGGAAGGATGACTTTCTGGT
GGAGTGAACTTTGACCTGGGTCTTTGAGAGAGAGAATGCATCTGGATACG
GAATAATTTCCTTCAGGTGGCTAGCATAGTAGCACAGTGTATAAAAATAG
ATGAAGTGACAGAGAAATCTGTTTTGGGTAAGTAAGGCTAAGATCTTATT
TGTCTAAGAGGCACATGTTGGGTTGGGTAAAGAAAAAGTATTACCACCCT
TACACCTGTCGCCTTGTGTATAGACAGTTTGTAGACTGGAATAGTTAGAA
GGTAGACATGTTCCTGTTTTCATGTAGCTGTATTCAACATGAATTGAAGC
ACACCTACATAGGAGACATGAGCTGCACTTTCAATGAACTAGTATGAGCC
AGACAAGTATAGAGAGGGCAGACAAGACTTGAATCTGTGAAATGCGATTA
AAGCATATCTACTTTGCAGATTTGTTAGAATAAAGTAAAATATCTGTAGG
GCCCACAAATTCTTGAGATTTGAAACATGGTTGTTTTCTCTCCTACACCA
CTACAACTTGTGTTTGAGGAAAATTGTGGTTTTTTAAAGGAAAGACCCTT
GTTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_p21.b1 MSMg01no445_p21.b1 CHROMAT_FILE:
MSMg01no445_p21.b1 PHD_FILE: MSMg01no445_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:23 2005
         (503 letters)



>mm_chr2_64777662_64778564
          Length = 903

 Score =  895 bits (463), Expect = 0.0
 Identities = 493/503 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgagttgtagaaagtgcttattctggtcttagctggagcagatgcttttgtttctgt 60
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 201 aggtgagttgtagaaagtgcttattctcgtcttagctggagcagatgcctttgtttctgt 260

                                                                       
Query: 61  ctcactgaccagttccattcactgcttatttttcggaaaactcagaccctggtttcctct 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ctcactgaccagttccattcactgcttatttttcggaaaactcagagcctggtttcctct 320

                                                                       
Query: 121 tctctttttcccacatgcacccagttccctgaaggaaaccctctgcctaaaatggctttc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 321 tctctttttcccacatgcacccagttccttgaaggaaaccctctgcctaaaatggctttt 380

                                                                       
Query: 181 ctcagtgctaacagatctccacctccttgaatataatgtgttgaaagccaaggcccatac 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagtgctaacagatcttcacctccttgaatataatgtgttgaaagccaaggcccatac 440

                                                                       
Query: 241 cctaatttttcttaccagcaatcatagaatgatcgttcaatgactttccctattccatat 300
           ||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaagttttcaaaccagcaatcatagaatgatcgttcaatgactttccctattccatat 500

                                                                       
Query: 301 ccagctttaagtcccaaagacaagaaagtcgagattccagaatatatttgtacctaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagctttaagtcccaaagacaagaaagtcgagattccagaatatatttgtacctaaaag 560

                                                                       
Query: 361 caaaaaccataccatgtctgtggggtagggggtgaatatacacacaagatagaaaaagac 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaagccataccatgtctgtggggtagggggtgaatatacacacaagatagaaaaagac 620

                                                                       
Query: 421 cttaaaagaaatgaaggtgtgatgtacactaaactaggagtaagtcctaaagactctgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttaaaagaaatgaaggtgtgatgtacactaaactaggagtaagtcctaaagactctgtg 680

                                  
Query: 481 ctaagtgaaatcagacagacaca 503
           |||||||||||||||||||||||
Sbjct: 681 ctaagtgaaatcagacagacaca 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no445_p21.g1 MSMg01no445_p21.g1 CHROMAT_FILE:
MSMg01no445_p21.g1 PHD_FILE: MSMg01no445_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:23 2005
         (464 letters)



>mm_chr2_64818455_64819318
          Length = 864

 Score =  843 bits (436), Expect = 0.0
 Identities = 457/464 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacagattatgaaagaatttataagctatataaccaatgcactgttaagcacaggcca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 664 tctacagattatgaaagaatttataagctatataaccaatgcactgttaatcacaggcca 605

                                                                       
Query: 61  aaacacaagaagtagatataaaaatgtagaaagcaataacctctatgacttagatggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaacacaagaagtagatataaaaatgtagaaagcaataacctctatgacttagatggaag 545

                                                                       
Query: 121 gatgactttctggtggagtgaactttgacctgggtctttgagagagagaatgcatctgga 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 544 gatgactttctggtggagtgaactttgacctgggtcttggagagagagaatgcatctgga 485

                                                                       
Query: 181 tacggaataatttccttcaggtggctagcatagtagcacagtgtataaaaatagatgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tacggaataatttccttcaggtggctagcatagtagcacagtgtataaaaatagatgaag 425

                                                                       
Query: 241 tgacagagaaatctgttttgggtaagtaaggctaagatcttatttgtctaagaggcacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgacagagaaatctgttttgggtaagtaaggctaagatcttatttgtctaagaggcacat 365

                                                                       
Query: 301 gttgggttgggtaaagaaaaagtattaccacccttacacctgtcgccttgtgtatagaca 360
           || || ||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 364 gtaggattgggtaaagaaaaagtgttaccaccctaacacctgtcgccttgtgtatagaca 305

                                                                       
Query: 361 gtttgtagactggaatagttagaaggtagacatgttcctgttttcatgtagctgtattca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtttgtagactggaatagttagaaggtagacatgttcctgttttcatgtagctgtattca 245

                                                       
Query: 421 acatgaattgaagcacacctacataggagacatgagctgcactt 464
           ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 244 acatgaattgaagcacacctacataggagacatgagctgaactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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