BAC Information

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BAC

Clone NameMSMg01-446B03
Chromosome2 (Build37)
Map Location 151,649,016 - 151,649,444
singlet/doubletsinglet
Overlap genenone
Upstream genePygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1
Downstream geneRspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446B03.T7 (MSMg01no446_b03.b1)MSMg01-446B03.TJ (MSMg01no446_b03.g1)
ACCAG534852AG534853
length727759
length of high quality
(start - end)
449 (42 - 490)249 (69 - 317)
definitionCHROMAT_FILE: MSMg01no446_b03.b1 PHD_FILE: MSMg01no446_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:29 2005CHROMAT_FILE: MSMg01no446_b03.g1 PHD_FILE: MSMg01no446_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACGGCTCTTACGCTCCACCTCTGGGTCAATTGGATTAATGGGTCCCCC
TTTGATGGGCAGTTAGGTTGCTTCCTGCCTTGACCTCTCATCAAGCAGAA
ACCATTTTCATAGATGCTGTGAGAGTGTGTGGAACTGACTTTTGAGATCT
GGGATCATGGGGTAGAGGAAACATCTGTTGTGCTTTTACCAGGCAGATAT
GTCCAAGTGGCCTCATCCTCTACCTGTGGGACAGAGGGTTGCCCTACACC
TGGATTCTCAGTGCTCTGTTCTCATCTGCACTTGCATCCCCATGCACCCG
CATCCCCGTGCACCTGCATCCCCGTGCACCCACATTCCCGTGCGCCCGCA
TCCTGGTGCATCCATATTCCGGTGTACCCGCATCCCTGTGCTGTTCATTT
CCCTAGTCGTGTCCTTTGGGGGATTTCTTTTCCTTTTGCAGAGTGCCATC
CAGGACTACATATCACTTTCAGCTGCTGTGTTTCTTTGTTCTCCTCTCAT
CTACAAAAGTCCGCGGTCTTACGGCTCTGACTGTTTCTGGCGAAAATGTA
CCAAACTCTGCTCTTTGCCTTTTCCCGCGTGTTGCCGTGTCCCTTAATTT
GCAGTTTGTCCTTTTTTTCCCTTCCTTTTATCCCTTATCCTTTTCCTGCT
ATTCTTTTGATCTGTCTCCAATTTTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTCCGACATTCCTAACTTGATTCAAATAGTTTTAGGAAGAA
AATATAAGGAGATGGTTTTAGTTGTTTTGTCAGAAAAACGTAATAAAGTT
AGGATCAAGAATAGAATGTGCTCCCCCATAGAACAGAAAGTAAAGGCTGC
ATAATAATAAGGACTACGACGAGCCTTCATAAATTACACTAAGAAGAGAA
ATGTTTTTGGGACAAATTTGTGGTTAAGAAAAAACATTCTAGGTCAAGTC
CATGGATGAAGCCACAGTTTTGTACTTTGATAAAGAAAGGCCATGCAAAA
CTGTTGCTTTGAACTTATAAATAGCTTATAGAATGAAACACTGCTTTGAA
CTTACTATGACATTCTACTGTAACTTCTCTTTTTCAAAAAAAGATTTATT
TATTTATTTATTTATTATATGCAAGCTACACTGCACATGTCCCTAGACCC
CCTATAATAGGCCTTCTGTATCGATACTGATTGGTCATTTATTCTTCACG
CCGCTTGATTTATTTTTACTCTCCCGCTTTCCCTATATTCTTTTTTGCCT
CCCTCTTTCCATTCGATCCCTTCTTTTTTCTTTCCCCTTTGTCATTTTTC
CCCTTCTTTTGTTCACCCTTTTACCCTCTTCTGTTGTCCTCCCTTTCCTC
AACACCCCTATCTCTTTCTCTTTACTCTATCTCCTCGTCTTCTTTTTTCC
TTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_b03.b1 MSMg01no446_b03.b1 CHROMAT_FILE:
MSMg01no446_b03.b1 PHD_FILE: MSMg01no446_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:29 2005
         (449 letters)



>mm_chr2_151648905_151649753
          Length = 849

 Score =  748 bits (387), Expect = 0.0
 Identities = 423/445 (95%), Gaps = 16/445 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacggctcttacgctccacctctgggtcaattggattaatgggtccccctttga 64
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gaattccacggctcagatgctccacctctgggtcaattggattaatgggtccccctttga 481

                                                                       
Query: 65  tgggcagttaggttgcttcctgccttgacctctcatcaagcagaaaccattttcatagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgggcagttaggttgcttcctgccttgacctctcatcaagcagaaaccattttcatagat 421

                                                                       
Query: 125 gctgtgagagtgtgtggaactgacttttgagatctgggatcatggggtagaggaaacatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 420 gctgtgagagtgtgtggaactgacttttgagatctgggatcatggggtagagggaacatc 361

                                                                       
Query: 185 tgttgtgcttttaccaggcagatatgtccaagtggcctcatcctctacctgtgggacaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgttgtgcttttaccaggcagatatgtccaagtggcctcatcctctacctgtgggacaga 301

                                                                       
Query: 245 gggttgccctacacctggattctcagtgctctgttctcatctgcacttgcatccccatgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gggttgccctacacctggattctcagtgctctgttctcatctgcacttgcatccccatgc 241

                                                                       
Query: 305 acccgcatccccgtgcacctgcatccccgtgcacccacattcccgtgcgcccgcatcctg 364
           ||| |||| |||||||||||||||||||||||||||                ||||||||
Sbjct: 240 acctgcattcccgtgcacctgcatccccgtgcaccc----------------gcatcctg 197

                                                                       
Query: 365 gtgcatccatattccggtgtacccgcatccctgtgctgttcatttccctagtcgtgtcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gtgcatccatattccggtgtacccgcatccctgtgctgttcatttccctagtcgtgtcct 137

                                    
Query: 425 ttgggggatttcttttccttttgca 449
           |||||||||||||||||||||||||
Sbjct: 136 ttgggggatttcttttccttttgca 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)