BAC Information

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BAC

Clone NameMSMg01-446B07
Chromosome2 (Build37)
Map Location 133,131,942 - 133,202,194
singlet/doubletdoublet
Overlap genenone
Upstream geneCds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785
Downstream geneA430048G15Rik, Bmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446B07.T7 (MSMg01no446_b07.b1)MSMg01-446B07.TJ (MSMg01no446_b07.g1)
ACCAG534860AG534861
length744767
length of high quality
(start - end)
194 (118 - 311)249 (67 - 315)
definitionCHROMAT_FILE: MSMg01no446_b07.b1 PHD_FILE: MSMg01no446_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:30 2005CHROMAT_FILE: MSMg01no446_b07.g1 PHD_FILE: MSMg01no446_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,202,001 - 133,202,194)(133,131,942 - 133,132,190)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGCACTCGGCGGAATTCTTTCA
AACATTCAATAAACTTGTTCCTACTCTTTCCTCTTTCTGGCTTCTCTCTT
TCTACTGGATTTAAACCAGAAGCCAGTTTTCATTTGTTAGAGAAATTCAC
CCTGCCAAATGACTAATGATAACATTTTTGTTCATCTAAGAGAGATGTGT
GTAGCATAGAGAAGAAGCTTTTGAAAGGTTCCTCTCAGTCATCATATATT
TCCAACTTCTACACTTGACTTTAGGTTACACCTCAAACACTAATGCTGTC
AGTCACCTTCGCTTAATCNCTCTTGATTTTGAGTTAGCTGCTATTTTAAC
ATATTTGAAGGACACCTGCACCAAAAAAAAATAAAAAAAATAAAAATTTT
CCAAAGACACTTACCAGTTCTTTGTCAAAGTCAAGGTTAAATGAGGTTAT
TCTTTTGTTATCTTAAAACAATGTAATCCAGTCTGGCCATAAATCTCTGA
GTTTTCTGTGTAAAACCCCCAAGCGTCGTAATTATTGACAATCTCTCTTA
TGCCCAGACTGTTGATCTAAAAAACGTTAAATGCTACTTTCCTAAGCCTT
CCGGGTCTTTTCATGAAATCTGGTTTTTATTTTTTACATGTTTTTTCCCT
ATATTATTTTTTTTTTTTCTTTATACTTTTTTGACGTGCTTTGTATTACA
TGCCCTATTTCCTTATTTTCTTGTTCACTTGCACCGTCTTAGGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGCTGCTCCAAGCACCCAACAGCTTCCAAGCT
AGGAGCACAATTAGAGACACGGAGACTTCTCAGCAGCCAAGACACACAGT
TCAGCCTGGAAATTCAGTTCTCAACAGAGAGTACCCAAGCCATGTGAACG
TTAAAGTCTGCCTTCTTGTGAAACCAAACTACCCAGAGCTGGAAGCACTT
GGCTGTTGGTAGGAGTACCTCTGATTTGAAGAACCGACTGCTTTCAGAAG
CTATGCACAAAGAGATATATTTTCGGTTATCTTGATTCCAGCCTCACACT
CTTCCCCTTTCTAACCATCTTGCTTTGTGGTAGATATTTTCAAATTGGAG
TCAGATGTGGAAGAAGCAGGACTCAAAAGTAAAATAGGCCCAGGCTTGGG
TCTAGTCTGAGCAGCAGCTCAGAAAGCTGTCTAGAGAAGTTCTGGAATTA
CGGGGAGGCGCGAATGTTTCTCCCGATTTTCTCTTAAATTAAGGGATTCT
TTTAATTCCTCATTGTTAATCTCTCCCTATACCCTTCTCTCTTTCTGTTT
TTTTGCGCTCCAACACTCCTCGTTTTTGTTCCTTTTTATTTCCCTCACCC
GCGCCCTCTTCTTTTTTCATTTTTATTCCACATGCTCTTCTCCTTACTGC
CCTCATTTCTTCTCTTCGTTTGCTTATCCCTTTCCATTATCTTGCTCACT
GTTTTCCCCTTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_b07.b1 MSMg01no446_b07.b1 CHROMAT_FILE:
MSMg01no446_b07.b1 PHD_FILE: MSMg01no446_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:30 2005
         (194 letters)



>mm_chr2_133201801_133202394
          Length = 594

 Score =  321 bits (166), Expect = 2e-92
 Identities = 187/194 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagccagttttcatttgttagagaaattcaccctgccaaatgactaatgataacattt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agaacccagttttcatttgttagagaaattcaccctgccaaatgactaatgataacattt 335

                                                                       
Query: 61  ttgttcatctaagagagatgtgtgtagcatagagaagaagcttttgaaaggttcctctca 120
           ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 334 ttgttcatctaagagagatgtgtgtagtatagagaagaggcttttgaaaggttcctctca 275

                                                                       
Query: 121 gtcatcatatatttccaacttctacacttgactttaggttacacctcaaacactaatgct 180
           ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 274 gtcatcatagattcccaacttctacacttgactttaggctacacctcaaacactaatgct 215

                         
Query: 181 gtcagtcaccttcg 194
           ||||||||| ||||
Sbjct: 214 gtcagtcactttcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no446_b07.g1 MSMg01no446_b07.g1 CHROMAT_FILE:
MSMg01no446_b07.g1 PHD_FILE: MSMg01no446_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:30 2005
         (249 letters)



>mm_chr2_133131742_133132390
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctgctccaagcacccaacagcttccaagctaggagcacaattagagacacggagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgctgctccaagcacccaacagcttccaagctaggagcacaattagagacacggagac 260

                                                                       
Query: 61  ttctcagcagccaagacacacagttcagcctggaaattcagttctcaacagagagtaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctcagcagccaagacacacagttcagcctggaaattcagttctcaacagagagtaccc 320

                                                                       
Query: 121 aagccatgtgaacgttaaagtctgccttcttgtgaaaccaaactacccagagctggaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagccatgtgaacgttaaagtctgccttcttgtgaaaccaaactacccagagctggaagc 380

                                                                       
Query: 181 acttggctgttggtaggagtacctctgatttgaagaaccgactgctttcagaagctatgc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttggctgtcggtaggagtacctctgatttgaagaaccgactgctttcagaagctatgc 440

                    
Query: 241 acaaagaga 249
           |||||||||
Sbjct: 441 acaaagaga 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)