BAC Information

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BAC

Clone NameMSMg01-446G03
Chromosome2 (Build37)
Map Location 107,217,436 - 107,393,943
singlet/doubletdoublet
Overlap genenone
Upstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446G03.T7 (MSMg01no446_g03.b1)MSMg01-446G03.TJ (MSMg01no446_g03.g1)
ACCAG535092AG535093
length723819
length of high quality
(start - end)		493 (40 - 532)136 (65 - 200)
definitionCHROMAT_FILE: MSMg01no446_g03.b1 PHD_FILE: MSMg01no446_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:53 2005CHROMAT_FILE: MSMg01no446_g03.g1 PHD_FILE: MSMg01no446_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,217,436 - 107,217,925)(107,393,808 - 107,393,943)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GGGTCTTTCTGGGGAGGTAATACACGAACTGGCATTGGTAAGGTGAGAGA
AAACTGATTGCCACAGATCACCCTCTCAAGCTTCCAGCCATCTGGGGAAT
ACCATATGGAAGAGGGAGGAGTTCAGAGAGGACTGGCGCTTAAATCATCA
TCAGGAGCCATTTTAGTTTTCACTGGACTAGATTTGACTGTAAGATATGA
CTGTAGTCTTCACTCTAGGCTTTGGGGTAACACTAGACTAAGTTAAAATA
ACAGGTATACTGTTTTCTAGCTATATAATTATTTCCAACTTAATTACATC
TCTAAGTTGTAAATTATTTATTCATCAGTGACATGAGAATAATATTCACT
TAGAGGAAAGTTTGTGATTGCCAATGGAGGCACTGTAAAGTACCTACACC
CTGCCTTGCCCTCATCTGCGGAGAGAATGATGCTTTATTTTCAATACCCA
TGTCTAGAACAAGCTTGAGAAGACCTTGGTGGAAATAGGGTCAGAATGAA
CTTCTTAGGCTAGCGCCTTCTGCTATCGAGTTCTGCTTATACATTACGCA
ATTCTCTTTCATGCTAGATACTGATCGCGTATGTACTCATTTTTCATGTT
CTTCTTTAGTACTCTTTTTCCTTTTCCCTTCTGCCGCCTTATCCAGGAGC
ATGTTTTTTCTTCCCCCCGATTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAAAATATTCCTACACTAAAATAAAATGTTATGGCT
CACATTTCTCCAAGCATAAGCATAAACACAAATTTGAAACATTTAGTTGA
GATGAGGAAAAACTATCAGTTGCCTGTAGTTCTANTCACACTTTGAGGCA
AGAAGACATATTGAGAATATTTTATTTGACAAGAGTTTTCATCTATACCC
CCCTCCTTAAGAATACTCTCCCCACATTTTTTCCGGCAAAAAAAAGATTA
TCTTCAATTGNCNATAATAATGTTTCTTTTTGGAATTCNCCCCNCNNNTC
CTTCTGCTCCNCACCACCNTTCTCCCTCCCATTTTTCTTTTTTTTTCCCT
CTAGCTCCCAACAACTACAATTTTTCTCCCCCNNNNTTTGGTGAGGAGCA
GAACNNNNCNNCCCCNNCTNCCNCTTTTTTCCTCTTTTTTTTCCCTCTTC
TCTTTCCTTTTTTCCTCCCTTTCCCCCTTTTTCCTCCTTTTTTCCTCCCC
CTACGTCGCACAACCCATTTCTTTGGCGCGTGAGGGGTCCTTTCTCCCTC
TTCCCCTTTTTTCTCCTCCTATTTTCTCCCCCCTTTTCCCCCCCCTCTCC
CTCTCTTCTCCCCCTCACCTTCTCCTTCCCCTTTTCCTCCCCTCCTCTTC
TCCCCCTCCCTCACCCCTCTCTTCTCCTTTATTTTTCCTATTTTCCCTTT
CTTCCTTCCCCCCTTCTTATTTCTCTCCCTTTTTCCCTCCTATTTCCCTC
CTCTTGTTGTTGTGGTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_g03.b1 MSMg01no446_g03.b1 CHROMAT_FILE:
MSMg01no446_g03.b1 PHD_FILE: MSMg01no446_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:53 2005
         (493 letters)



>mm_chr2_107217233_107218125
          Length = 893

 Score =  855 bits (442), Expect = 0.0
 Identities = 478/490 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagggtctttctggggaggtaatacacgaactggcattggtaaggtgagagaaa 63
           ||||||||||||| || ||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct: 204 ggaattcagggtcattatggggaggtaatacatgaactggcattggaaaggagagagaaa 263

                                                                       
Query: 64  actgattgccacagatcaccctctcaagcttccagccatctggggaataccatatggaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 264 actgattgccacagatcaccctctcaagcttccagccatctggggaataccatatggaaa 323

                                                                       
Query: 124 agggaggagttcagagaggactggcgcttaaatcatcatcaggagccattttagttttca 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 agggaggagttcagagaggactggcacttaaatcatcatcaggagccattttagttttca 383

                                                                       
Query: 184 ctggactagatttgactgtaagatatgactgtagtcttcactctaggctttggggtaaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctggactagatttgactgtaagatatgactgtagtcttcactctaggctttggggtaaca 443

                                                                       
Query: 244 ctagactaagttaaaataacaggtatactgttttctagctatataattatttccaactta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctagactaagttaaaataacaggtatactgttttctagctatataattatttccaactta 503

                                                                       
Query: 304 attacatctctaagttgtaaattatttattcatcagtgacatgagaataatattcactta 363
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attacatctctaagttgtgaattatttattcatcagtgacatgagaataatattcactta 563

                                                                       
Query: 364 gaggaaagtttgtgattgccaatggaggcactgtaaagtacctacaccctgccttgccct 423
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 564 gaggaaagtttgtgattgccaatggaggcactgtaaagtacccacaccctgccttgccct 623

                                                                       
Query: 424 catctgcggagagaatgatgctttattttcaatacccatgtctagaacaagcttgagaag 483
           |||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 624 catctgtggagagaatgatgctttattttcaatactcaggtctagaacaagcttgagaag 683

                     
Query: 484 accttggtgg 493
           ||||||||||
Sbjct: 684 accttggtgg 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no446_g03.g1 MSMg01no446_g03.g1 CHROMAT_FILE:
MSMg01no446_g03.g1 PHD_FILE: MSMg01no446_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:53 2005
         (136 letters)



>mm_chr2_107393608_107394145
          Length = 538

 Score =  242 bits (125), Expect = 7e-69
 Identities = 133/136 (97%), Gaps = 2/136 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaatattcctacactaaaataaaatgttatggctcacatttctccaagcataagcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 caaaatattcctacactaaaataaaatgttatggctcacatttctccaagcataagcata 277

                                                                       
Query: 61  aacacaaatttgaaacatttagttgagatgaggaaaaactatcag-ttgcctgtagttct 119
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 276 aacacaaatttgaaacatttagttgagatgaggaaaaactatcagtttgcctgtagttct 217

                           
Query: 120 -antcacactttgagg 134
            | |||||||||||||
Sbjct: 216 aaatcacactttgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 538
Length adjustment: 8
Effective length of query: 128
Effective length of database: 530
Effective search space:    67840
Effective search space used:    67840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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